miRNA display CGI


Results 21 - 40 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 132499 0.69 0.829687
Target:  5'- -gGCGAAGGCGCcgcaagcggcGAcGGCGGucccGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCG----------UU-CCGCC----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132451 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132380 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132150 0.7 0.733123
Target:  5'- cUGCugccGCGCAGGGUGgGGCCGGc- -3'
miRNA:   3'- uACGuuuuCGCGUUCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 131960 0.66 0.935802
Target:  5'- -gGCGAcGGCgGCGAGaGCGGGaUCAGAa -3'
miRNA:   3'- uaCGUUuUCG-CGUUC-CGCCC-GGUUUc -5'
6486 3' -53.4 NC_001847.1 + 131598 0.69 0.792901
Target:  5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3'
miRNA:   3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 131550 0.68 0.871145
Target:  5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3'
miRNA:   3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 130731 0.67 0.891126
Target:  5'- -gGCGGAGGCGCGgAGGacgcggacagcgccUGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCGCGU-UCC--------------GCCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 130671 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130614 0.67 0.886118
Target:  5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130581 0.68 0.8633
Target:  5'- -cGCgGAGAGCaGCGAGGacgaCGGcGCCGGAGa -3'
miRNA:   3'- uaCG-UUUUCG-CGUUCC----GCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130514 0.74 0.510532
Target:  5'- -cGCGcGAGCGCc-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGuuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 129342 0.71 0.701782
Target:  5'- -cGCGccAAGCGCAAGcGCGGuGCCGGGc -3'
miRNA:   3'- uaCGUu-UUCGCGUUC-CGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 129303 0.79 0.298066
Target:  5'- -gGCGGGccuGGUGCAAGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUU---UCGCGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 129198 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 128873 0.67 0.886118
Target:  5'- -gGCAAAAGCaaAAGGCGcGCuCGAAGg -3'
miRNA:   3'- uaCGUUUUCGcgUUCCGCcCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 128809 0.66 0.919135
Target:  5'- -gGCGGgcGGGCGCGcAGGCgcgcacaaaaaGGGCCAAc- -3'
miRNA:   3'- uaCGUU--UUCGCGU-UCCG-----------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 128553 0.69 0.792901
Target:  5'- -gGCAAAAGUaGgGAGGCaGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG-CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 128272 1.06 0.005067
Target:  5'- aAUGCAAAAGCGCAAGGCGGGCCAAAGc -3'
miRNA:   3'- -UACGUUUUCGCGUUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 128215 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.