Results 41 - 60 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 134777 | 0.77 | 0.369079 |
Target: 5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3' miRNA: 3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 30438 | 0.77 | 0.369079 |
Target: 5'- -cGCGGAGGCGCcggggcugcacGAGGUGGGCCGc-- -3' miRNA: 3'- uaCGUUUUCGCG-----------UUCCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 129303 | 0.79 | 0.298066 |
Target: 5'- -gGCGGGccuGGUGCAAGGCGGGCCu--- -3' miRNA: 3'- uaCGUUU---UCGCGUUCCGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 83256 | 0.8 | 0.256895 |
Target: 5'- -gGcCGAAAGCGCGgcggGGGCGGGCgCAGAGg -3' miRNA: 3'- uaC-GUUUUCGCGU----UCCGCCCG-GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3965 | 0.81 | 0.238114 |
Target: 5'- -aGCGccAGCGCGAGGUGGGCCGu-- -3' miRNA: 3'- uaCGUuuUCGCGUUCCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 100884 | 0.74 | 0.520808 |
Target: 5'- -gGCAGGGGCGCGGccGGCGGGagaCGGGGu -3' miRNA: 3'- uaCGUUUUCGCGUU--CCGCCCg--GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 108479 | 0.74 | 0.520808 |
Target: 5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3' miRNA: 3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 114295 | 0.72 | 0.626855 |
Target: 5'- -gGCAGGGGCGUucuuGcCGGGCCAGGGa -3' miRNA: 3'- uaCGUUUUCGCGuu--CcGCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 104906 | 0.73 | 0.616092 |
Target: 5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3' miRNA: 3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 8111 | 0.73 | 0.616092 |
Target: 5'- -gGCGccAGCGCAGGcGCGGGgccCCAGGGg -3' miRNA: 3'- uaCGUuuUCGCGUUC-CGCCC---GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 68796 | 0.73 | 0.605344 |
Target: 5'- -gGCGGccGCGCGA-GCGGGCCGAc- -3' miRNA: 3'- uaCGUUuuCGCGUUcCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 125711 | 0.73 | 0.605344 |
Target: 5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3' miRNA: 3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 52568 | 0.73 | 0.605344 |
Target: 5'- cUGCGAGAGCuggagcuCGAGGCGGcgGCCGAGGc -3' miRNA: 3'- uACGUUUUCGc------GUUCCGCC--CGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 63414 | 0.73 | 0.583921 |
Target: 5'- -cGCAcgGGAGCGCAcgcggcgccGGCGGGCCGGc- -3' miRNA: 3'- uaCGU--UUUCGCGUu--------CCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 71072 | 0.73 | 0.583921 |
Target: 5'- gGUGCuggcGGCGCucggccGGCGcGGCCAGAGg -3' miRNA: 3'- -UACGuuu-UCGCGuu----CCGC-CCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 102069 | 0.73 | 0.583921 |
Target: 5'- -gGCAGcAAGgGCAGGcGCGGGCCGc-- -3' miRNA: 3'- uaCGUU-UUCgCGUUC-CGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 75358 | 0.73 | 0.573263 |
Target: 5'- -gGUAAAAGCGCGucucGGCGGGCau-GGg -3' miRNA: 3'- uaCGUUUUCGCGUu---CCGCCCGguuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 81219 | 0.74 | 0.531165 |
Target: 5'- gAUGCAGGcucGGCgGCAGcggcGGCGGGCCAGGc -3' miRNA: 3'- -UACGUUU---UCG-CGUU----CCGCCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 40377 | 0.74 | 0.531165 |
Target: 5'- -aGCGGAAGCGgGGGGCGacggccccGGCCAAGa -3' miRNA: 3'- uaCGUUUUCGCgUUCCGC--------CCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 132613 | 0.74 | 0.524942 |
Target: 5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3' miRNA: 3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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