miRNA display CGI


Results 21 - 40 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 42492 0.66 0.935802
Target:  5'- -cGCcGAAGCGCu--GCGGGCgAAAc -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 37124 0.66 0.935802
Target:  5'- cAUGCucuGGGGCGCGcacgcccaGCGGGCCuuuGGGg -3'
miRNA:   3'- -UACGu--UUUCGCGUuc------CGCCCGGu--UUC- -5'
6486 3' -53.4 NC_001847.1 + 54354 0.66 0.935802
Target:  5'- -cGUAAAGGCGUguauaAAGGCcGGGUCGu-- -3'
miRNA:   3'- uaCGUUUUCGCG-----UUCCG-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 132572 0.66 0.935802
Target:  5'- -gGCGGccGCGC-AGGCGcccgcGCCGAAGa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCGCc----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3260 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 32941 0.66 0.935802
Target:  5'- -gGCGGcGGgGCcGGGgGGGCgGAGGa -3'
miRNA:   3'- uaCGUUuUCgCGuUCCgCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 96076 0.66 0.935802
Target:  5'- -aGCcggcGGCgGCAAuGGCGGaGCCGGAGu -3'
miRNA:   3'- uaCGuuu-UCG-CGUU-CCGCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 52102 0.66 0.935802
Target:  5'- -cGCGGcccAAGCGCAcuAGcggccGCGGGCCGGc- -3'
miRNA:   3'- uaCGUU---UUCGCGU--UC-----CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 106073 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 27267 0.66 0.935802
Target:  5'- -cGCGAGAGCcggauGUGAGGCugcccgccGGGCgAGAGg -3'
miRNA:   3'- uaCGUUUUCG-----CGUUCCG--------CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 86038 0.66 0.935802
Target:  5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3'
miRNA:   3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 103299 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 109268 0.66 0.935802
Target:  5'- -gGCAGGGGCgggcugcaaGCGAGGgGGGCgAgcAAGa -3'
miRNA:   3'- uaCGUUUUCG---------CGUUCCgCCCGgU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 486 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 29435 0.66 0.935285
Target:  5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3'
miRNA:   3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 59406 0.66 0.934242
Target:  5'- -gGCGGAGGCGCGGcGGUcaucgcugcgccccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUU-CCG--------------CCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 132451 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 39419 0.66 0.930511
Target:  5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3'
miRNA:   3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5'
6486 3' -53.4 NC_001847.1 + 18728 0.66 0.930511
Target:  5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3'
miRNA:   3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 135135 0.66 0.930511
Target:  5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3'
miRNA:   3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.