Results 61 - 80 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 75358 | 0.73 | 0.573263 |
Target: 5'- -gGUAAAAGCGCGucucGGCGGGCau-GGg -3' miRNA: 3'- uaCGUUUUCGCGUu---CCGCCCGguuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 102069 | 0.73 | 0.583921 |
Target: 5'- -gGCAGcAAGgGCAGGcGCGGGCCGc-- -3' miRNA: 3'- uaCGUU-UUCgCGUUC-CGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 50070 | 0.72 | 0.637622 |
Target: 5'- -cGCGcgcGGCGCGgacccGGGCGcGGCCAAGGc -3' miRNA: 3'- uaCGUuu-UCGCGU-----UCCGC-CCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 128215 | 0.72 | 0.648384 |
Target: 5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3' miRNA: 3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 80020 | 0.72 | 0.659131 |
Target: 5'- -cGCGuuuGGCGCGGGGgGGGUCGGc- -3' miRNA: 3'- uaCGUuu-UCGCGUUCCgCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 34602 | 0.72 | 0.669855 |
Target: 5'- -gGCGcuGGCGCGGcGGCGcGCCGAGGa -3' miRNA: 3'- uaCGUuuUCGCGUU-CCGCcCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 98057 | 0.72 | 0.669855 |
Target: 5'- -cGCucuccGCGCucAGGCGGGCCAGu- -3' miRNA: 3'- uaCGuuuu-CGCGu-UCCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 19266 | 0.71 | 0.680545 |
Target: 5'- -cGCGAGccggcGGCGCAGcgucugugcGGCGGGCCGc-- -3' miRNA: 3'- uaCGUUU-----UCGCGUU---------CCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 72583 | 0.71 | 0.680545 |
Target: 5'- -cGCGAu-GCGC-GGGCuGGGCCAAAa -3' miRNA: 3'- uaCGUUuuCGCGuUCCG-CCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 74632 | 0.71 | 0.680545 |
Target: 5'- -gGCAGcgccucGCGCGAGGCGGGgCAGc- -3' miRNA: 3'- uaCGUUuu----CGCGUUCCGCCCgGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 115281 | 0.72 | 0.636545 |
Target: 5'- -gGCGGGcuaagccGGCGCccccGGGcGCGGGCCAAGGg -3' miRNA: 3'- uaCGUUU-------UCGCG----UUC-CGCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 64466 | 0.72 | 0.626855 |
Target: 5'- -cGCGGcGGCGC--GGgGGGCCGAAGc -3' miRNA: 3'- uaCGUUuUCGCGuuCCgCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 71072 | 0.73 | 0.583921 |
Target: 5'- gGUGCuggcGGCGCucggccGGCGcGGCCAGAGg -3' miRNA: 3'- -UACGuuu-UCGCGuu----CCGC-CCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 63414 | 0.73 | 0.583921 |
Target: 5'- -cGCAcgGGAGCGCAcgcggcgccGGCGGGCCGGc- -3' miRNA: 3'- uaCGU--UUUCGCGUu--------CCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 52568 | 0.73 | 0.605344 |
Target: 5'- cUGCGAGAGCuggagcuCGAGGCGGcgGCCGAGGc -3' miRNA: 3'- uACGUUUUCGc------GUUCCGCC--CGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 125711 | 0.73 | 0.605344 |
Target: 5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3' miRNA: 3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 68796 | 0.73 | 0.605344 |
Target: 5'- -gGCGGccGCGCGA-GCGGGCCGAc- -3' miRNA: 3'- uaCGUUuuCGCGUUcCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 8111 | 0.73 | 0.616092 |
Target: 5'- -gGCGccAGCGCAGGcGCGGGgccCCAGGGg -3' miRNA: 3'- uaCGUuuUCGCGUUC-CGCCC---GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 104906 | 0.73 | 0.616092 |
Target: 5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3' miRNA: 3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 114295 | 0.72 | 0.626855 |
Target: 5'- -gGCAGGGGCGUucuuGcCGGGCCAGGGa -3' miRNA: 3'- uaCGUUUUCGCGuu--CcGCCCGGUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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