miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 6202 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 6248 0.69 0.511899
Target:  5'- uCCCUCCgCCCCCAGCauugCCUucgagcgcgccuuuUGCUUUUGc -3'
miRNA:   3'- -GGGGGG-GGGGGUUGa---GGG--------------GCGAAAAC- -5'
6486 5' -60.5 NC_001847.1 + 6424 0.78 0.166283
Target:  5'- cCCCCCUCCCCCucGCaCCCCGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGu-UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 7274 0.77 0.187966
Target:  5'- cUCCCCCCCCCCAucgUUCCuuGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu--GAGGggCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 7561 0.79 0.143244
Target:  5'- gCCCCCCCCCCucccCUCCCCcCUgUUGa -3'
miRNA:   3'- gGGGGGGGGGGuu--GAGGGGcGAaAAC- -5'
6486 5' -60.5 NC_001847.1 + 7992 0.74 0.280973
Target:  5'- gCCCCCCCUCCAcuuggacaucGC-CCCCGCg---- -3'
miRNA:   3'- gGGGGGGGGGGU----------UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 8913 0.67 0.612415
Target:  5'- aCCCCggacgCCCCgCCGACgaCCCCGCcaagUGa -3'
miRNA:   3'- -GGGG-----GGGGgGGUUGa-GGGGCGaaa-AC- -5'
6486 5' -60.5 NC_001847.1 + 9544 0.67 0.662153
Target:  5'- gCCCCCCaUCCCCAuCcCCCCGa----- -3'
miRNA:   3'- -GGGGGG-GGGGGUuGaGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 9573 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9617 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9661 0.72 0.351036
Target:  5'- gCCCCCauCCCCCCGAuccCUCgCCCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUU---GAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9699 0.71 0.432642
Target:  5'- cCCgCCCUCCCCgGACgcgCCCUGCg---- -3'
miRNA:   3'- -GG-GGGGGGGGgUUGa--GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9919 0.69 0.543533
Target:  5'- gCCCCgCCCCCGcggacgagcacGCUCgCCGCg---- -3'
miRNA:   3'- gGGGGgGGGGGU-----------UGAGgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 10409 0.67 0.622363
Target:  5'- gUCCUCUCCUCCGcCUCgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 10441 0.71 0.39867
Target:  5'- gCCCCCgCgCCCGGCUCCCCugGCcgcgUUGc -3'
miRNA:   3'- -GGGGGgGgGGGUUGAGGGG--CGaa--AAC- -5'
6486 5' -60.5 NC_001847.1 + 10762 0.73 0.336081
Target:  5'- gCCCCCUCUCCCGcccuCUCCCCGg----- -3'
miRNA:   3'- -GGGGGGGGGGGUu---GAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 10979 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 11015 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 11051 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 11087 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.