miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 100 0.66 0.720985
Target:  5'- uCCgCCCCUgggUCCGGCgCCCCGCg---- -3'
miRNA:   3'- -GGgGGGGG---GGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 193 0.73 0.32878
Target:  5'- gCCCCCgCCCCC-GC-CCCCGCc---- -3'
miRNA:   3'- -GGGGGgGGGGGuUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 237 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 265 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 293 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 321 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 349 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 377 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 405 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 728 0.73 0.321598
Target:  5'- gCCCCCUCCCUccCUUCCCGCg---- -3'
miRNA:   3'- gGGGGGGGGGGuuGAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 1328 0.67 0.642273
Target:  5'- gCUCCCCgagCCCCAGCgccgcgCCCUGCg---- -3'
miRNA:   3'- gGGGGGG---GGGGUUGa-----GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 2412 0.66 0.701574
Target:  5'- uCgUCCUCCCCCGagggGCcCCCCGCg---- -3'
miRNA:   3'- -GgGGGGGGGGGU----UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 2648 0.66 0.720985
Target:  5'- uUCgUCCUCCCCGucCUCCCCGUc---- -3'
miRNA:   3'- -GGgGGGGGGGGUu-GAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 4254 0.77 0.183439
Target:  5'- gCCCCCCgCCUCAG-UCCCCGCUUc-- -3'
miRNA:   3'- -GGGGGGgGGGGUUgAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 4940 0.66 0.701574
Target:  5'- gCgCCCCCCCgAGCaaCCUCGCUa--- -3'
miRNA:   3'- gGgGGGGGGGgUUGa-GGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 5141 0.75 0.227827
Target:  5'- uUCCCCCCCCCCAcCcCCaCCGCgcgUGc -3'
miRNA:   3'- -GGGGGGGGGGGUuGaGG-GGCGaaaAC- -5'
6486 5' -60.5 NC_001847.1 + 5874 0.68 0.582681
Target:  5'- uUCCCCUCCCCA--UUCCCGCc---- -3'
miRNA:   3'- gGGGGGGGGGGUugAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 5980 0.71 0.42399
Target:  5'- uCCCCUUUCCCCuuCuUCCCUGCUUg-- -3'
miRNA:   3'- -GGGGGGGGGGGuuG-AGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 6012 0.66 0.720985
Target:  5'- gCCgCCCCUCaCCCuuCUCCCuuuCGCgaUUGg -3'
miRNA:   3'- -GG-GGGGGG-GGGuuGAGGG---GCGaaAAC- -5'
6486 5' -60.5 NC_001847.1 + 6108 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.