Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 5' | -60.5 | NC_001847.1 | + | 108921 | 0.86 | 0.043542 |
Target: 5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3' miRNA: 3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 126158 | 0.73 | 0.336081 |
Target: 5'- gCCCCCaCCCCCGuCUgCCCGCc---- -3' miRNA: 3'- gGGGGG-GGGGGUuGAgGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 113575 | 0.73 | 0.336081 |
Target: 5'- gCCCCCUCUCCCGcccuCUCCCCGg----- -3' miRNA: 3'- -GGGGGGGGGGGUu---GAGGGGCgaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 81287 | 0.73 | 0.336081 |
Target: 5'- gCCCCacagcaCCCCCUGAC-CCCCGCg---- -3' miRNA: 3'- -GGGGg-----GGGGGGUUGaGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 103006 | 0.73 | 0.32878 |
Target: 5'- gCCCCCgCCCCC-GC-CCCCGCc---- -3' miRNA: 3'- -GGGGGgGGGGGuUGaGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 103541 | 0.73 | 0.321598 |
Target: 5'- gCCCCCUCCCUccCUUCCCGCg---- -3' miRNA: 3'- gGGGGGGGGGGuuGAGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 119815 | 0.73 | 0.300756 |
Target: 5'- aCCCCCCgCCC-GC-CCCCGCUa--- -3' miRNA: 3'- gGGGGGGgGGGuUGaGGGGCGAaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 110805 | 0.74 | 0.280973 |
Target: 5'- gCCCCCCCUCCAcuuggacaucGC-CCCCGCg---- -3' miRNA: 3'- gGGGGGGGGGGU----------UGaGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 66934 | 0.75 | 0.256222 |
Target: 5'- cCCCCUUCCCCCuuuucacguCUCCCCGCc---- -3' miRNA: 3'- -GGGGGGGGGGGuu-------GAGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 107954 | 0.75 | 0.227827 |
Target: 5'- uUCCCCCCCCCCAcCcCCaCCGCgcgUGc -3' miRNA: 3'- -GGGGGGGGGGGUuGaGG-GGCGaaaAC- -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 88369 | 0.76 | 0.217236 |
Target: 5'- uCCCCCCCCCCCccCUCUuuaCCGCg---- -3' miRNA: 3'- -GGGGGGGGGGGuuGAGG---GGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 127538 | 0.76 | 0.2121 |
Target: 5'- aCCCCCCCaCCCCA---CCCCGCa---- -3' miRNA: 3'- -GGGGGGG-GGGGUugaGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 110087 | 0.77 | 0.187966 |
Target: 5'- cUCCCCCCCCCCAucgUUCCuuGCUc--- -3' miRNA: 3'- -GGGGGGGGGGGUu--GAGGggCGAaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 126457 | 0.77 | 0.183439 |
Target: 5'- cCCCCCUCCUCUAGCcCCCCGUgugUGg -3' miRNA: 3'- -GGGGGGGGGGGUUGaGGGGCGaaaAC- -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 107067 | 0.77 | 0.183439 |
Target: 5'- gCCCCCCgCCUCAG-UCCCCGCUUc-- -3' miRNA: 3'- -GGGGGGgGGGGUUgAGGGGCGAAaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 109237 | 0.78 | 0.166283 |
Target: 5'- cCCCCCUCCCCCucGCaCCCCGCa---- -3' miRNA: 3'- -GGGGGGGGGGGu-UGaGGGGCGaaaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 130287 | 0.78 | 0.166283 |
Target: 5'- gCCgCCCCCCCCC--CUCCCCuGCgUUUUGa -3' miRNA: 3'- -GG-GGGGGGGGGuuGAGGGG-CG-AAAAC- -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 110374 | 0.79 | 0.143244 |
Target: 5'- gCCCCCCCCCCucccCUCCCCcCUgUUGa -3' miRNA: 3'- gGGGGGGGGGGuu--GAGGGGcGAaAAC- -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 109015 | 0.86 | 0.043542 |
Target: 5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3' miRNA: 3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5' |
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6486 | 5' | -60.5 | NC_001847.1 | + | 128307 | 1.09 | 0.001091 |
Target: 5'- gCCCCCCCCCCCAACUCCCCGCUUUUGu -3' miRNA: 3'- -GGGGGGGGGGGUUGAGGGGCGAAAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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