miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 124272 0.73 0.336081
Target:  5'- cCCCCUUCCCCCucccgCCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGuuga-GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 66934 0.75 0.256222
Target:  5'- cCCCCUUCCCCCuuuucacguCUCCCCGCc---- -3'
miRNA:   3'- -GGGGGGGGGGGuu-------GAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 110805 0.74 0.280973
Target:  5'- gCCCCCCCUCCAcuuggacaucGC-CCCCGCg---- -3'
miRNA:   3'- gGGGGGGGGGGU----------UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 119815 0.73 0.300756
Target:  5'- aCCCCCCgCCC-GC-CCCCGCUa--- -3'
miRNA:   3'- gGGGGGGgGGGuUGaGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 103541 0.73 0.321598
Target:  5'- gCCCCCUCCCUccCUUCCCGCg---- -3'
miRNA:   3'- gGGGGGGGGGGuuGAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 103006 0.73 0.32878
Target:  5'- gCCCCCgCCCCC-GC-CCCCGCc---- -3'
miRNA:   3'- -GGGGGgGGGGGuUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 81287 0.73 0.336081
Target:  5'- gCCCCacagcaCCCCCUGAC-CCCCGCg---- -3'
miRNA:   3'- -GGGGg-----GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113575 0.73 0.336081
Target:  5'- gCCCCCUCUCCCGcccuCUCCCCGg----- -3'
miRNA:   3'- -GGGGGGGGGGGUu---GAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 126158 0.73 0.336081
Target:  5'- gCCCCCaCCCCCGuCUgCCCGCc---- -3'
miRNA:   3'- gGGGGG-GGGGGUuGAgGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 107954 0.75 0.227827
Target:  5'- uUCCCCCCCCCCAcCcCCaCCGCgcgUGc -3'
miRNA:   3'- -GGGGGGGGGGGUuGaGG-GGCGaaaAC- -5'
6486 5' -60.5 NC_001847.1 + 88369 0.76 0.217236
Target:  5'- uCCCCCCCCCCCccCUCUuuaCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGG---GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 127538 0.76 0.2121
Target:  5'- aCCCCCCCaCCCCA---CCCCGCa---- -3'
miRNA:   3'- -GGGGGGG-GGGGUugaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 108921 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 109015 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 110374 0.79 0.143244
Target:  5'- gCCCCCCCCCCucccCUCCCCcCUgUUGa -3'
miRNA:   3'- gGGGGGGGGGGuu--GAGGGGcGAaAAC- -5'
6486 5' -60.5 NC_001847.1 + 130287 0.78 0.166283
Target:  5'- gCCgCCCCCCCCC--CUCCCCuGCgUUUUGa -3'
miRNA:   3'- -GG-GGGGGGGGGuuGAGGGG-CG-AAAAC- -5'
6486 5' -60.5 NC_001847.1 + 109237 0.78 0.166283
Target:  5'- cCCCCCUCCCCCucGCaCCCCGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGu-UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 107067 0.77 0.183439
Target:  5'- gCCCCCCgCCUCAG-UCCCCGCUUc-- -3'
miRNA:   3'- -GGGGGGgGGGGUUgAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 126457 0.77 0.183439
Target:  5'- cCCCCCUCCUCUAGCcCCCCGUgugUGg -3'
miRNA:   3'- -GGGGGGGGGGGUUGaGGGGCGaaaAC- -5'
6486 5' -60.5 NC_001847.1 + 110087 0.77 0.187966
Target:  5'- cUCCCCCCCCCCAucgUUCCuuGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu--GAGGggCGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.