miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 128307 1.09 0.001091
Target:  5'- gCCCCCCCCCCCAACUCCCCGCUUUUGu -3'
miRNA:   3'- -GGGGGGGGGGGUUGAGGGGCGAAAAC- -5'
6486 5' -60.5 NC_001847.1 + 25494 1.09 0.001091
Target:  5'- gCCCCCCCCCCCAACUCCCCGCUUUUGu -3'
miRNA:   3'- -GGGGGGGGGGGUUGAGGGGCGAAAAC- -5'
6486 5' -60.5 NC_001847.1 + 6202 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 6108 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 108921 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 109015 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 50682 0.82 0.088302
Target:  5'- gCCCCCCCCCCC-GCUCCCCa------ -3'
miRNA:   3'- -GGGGGGGGGGGuUGAGGGGcgaaaac -5'
6486 5' -60.5 NC_001847.1 + 103061 0.79 0.132852
Target:  5'- cCCCCUCCCCCCAAUcuUCCCCGg----- -3'
miRNA:   3'- -GGGGGGGGGGGUUG--AGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 7561 0.79 0.143244
Target:  5'- gCCCCCCCCCCucccCUCCCCcCUgUUGa -3'
miRNA:   3'- gGGGGGGGGGGuu--GAGGGGcGAaAAC- -5'
6486 5' -60.5 NC_001847.1 + 110374 0.79 0.143244
Target:  5'- gCCCCCCCCCCucccCUCCCCcCUgUUGa -3'
miRNA:   3'- gGGGGGGGGGGuu--GAGGGGcGAaAAC- -5'
6486 5' -60.5 NC_001847.1 + 27474 0.78 0.166283
Target:  5'- gCCgCCCCCCCCC--CUCCCCuGCgUUUUGa -3'
miRNA:   3'- -GG-GGGGGGGGGuuGAGGGG-CG-AAAAC- -5'
6486 5' -60.5 NC_001847.1 + 6424 0.78 0.166283
Target:  5'- cCCCCCUCCCCCucGCaCCCCGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGu-UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 130287 0.78 0.166283
Target:  5'- gCCgCCCCCCCCC--CUCCCCuGCgUUUUGa -3'
miRNA:   3'- -GG-GGGGGGGGGuuGAGGGG-CG-AAAAC- -5'
6486 5' -60.5 NC_001847.1 + 109237 0.78 0.166283
Target:  5'- cCCCCCUCCCCCucGCaCCCCGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGu-UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 126457 0.77 0.183439
Target:  5'- cCCCCCUCCUCUAGCcCCCCGUgugUGg -3'
miRNA:   3'- -GGGGGGGGGGGUUGaGGGGCGaaaAC- -5'
6486 5' -60.5 NC_001847.1 + 4254 0.77 0.183439
Target:  5'- gCCCCCCgCCUCAG-UCCCCGCUUc-- -3'
miRNA:   3'- -GGGGGGgGGGGUUgAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 107067 0.77 0.183439
Target:  5'- gCCCCCCgCCUCAG-UCCCCGCUUc-- -3'
miRNA:   3'- -GGGGGGgGGGGUUgAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 23644 0.77 0.183439
Target:  5'- cCCCCCUCCUCUAGCcCCCCGUgugUGg -3'
miRNA:   3'- -GGGGGGGGGGGUUGaGGGGCGaaaAC- -5'
6486 5' -60.5 NC_001847.1 + 110087 0.77 0.187966
Target:  5'- cUCCCCCCCCCCAucgUUCCuuGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu--GAGGggCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 7274 0.77 0.187966
Target:  5'- cUCCCCCCCCCCAucgUUCCuuGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu--GAGGggCGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.