miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 293 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 73826 0.66 0.711312
Target:  5'- gCCCgCCCCgCCCCG-CgcaCCCGCg---- -3'
miRNA:   3'- -GGG-GGGG-GGGGUuGag-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 265 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 124817 0.66 0.701574
Target:  5'- uCCUCCCCCUCCucguccgcCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuu------GAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113972 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 105225 0.66 0.701574
Target:  5'- uCgUCCUCCCCCGagggGCcCCCCGCg---- -3'
miRNA:   3'- -GgGGGGGGGGGU----UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 237 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 134304 0.66 0.691781
Target:  5'- uCCUCCUCCUCCucCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113828 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 126663 0.66 0.691781
Target:  5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113900 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 64347 0.66 0.672063
Target:  5'- -aUCCCCUCCCGGCcCCgCCGCg---- -3'
miRNA:   3'- ggGGGGGGGGGUUGaGG-GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113864 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 113792 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 61927 0.66 0.690799
Target:  5'- cCCCCCUCCUCCGcgucagcggcggcGCggCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGagGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 109768 0.66 0.691781
Target:  5'- uCCCCCUCCgCCCGccgccGCcCCCUGCc---- -3'
miRNA:   3'- -GGGGGGGG-GGGU-----UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 55604 0.66 0.681941
Target:  5'- gCCCCagCCCCCCCGg--CCCCGaCg---- -3'
miRNA:   3'- -GGGG--GGGGGGGUugaGGGGC-Gaaaac -5'
6486 5' -60.5 NC_001847.1 + 113936 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 63728 0.66 0.701574
Target:  5'- aCCCUCCCCCCGGCcgagcaacagCgCCGCc---- -3'
miRNA:   3'- gGGGGGGGGGGUUGa---------GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 107753 0.66 0.701574
Target:  5'- gCgCCCCCCCgAGCaaCCUCGCUa--- -3'
miRNA:   3'- gGgGGGGGGGgUUGa-GGGGCGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.