miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 100492 0.66 0.720985
Target:  5'- gCCgCCCCCUCGGCgCgCCGCUc--- -3'
miRNA:   3'- gGGgGGGGGGGUUGaGgGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 11015 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 76155 0.66 0.691781
Target:  5'- gCUCgCCUCCgCCGugUCCUCGCUg--- -3'
miRNA:   3'- -GGGgGGGGG-GGUugAGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 25494 1.09 0.001091
Target:  5'- gCCCCCCCCCCCAACUCCCCGCUUUUGu -3'
miRNA:   3'- -GGGGGGGGGGGUUGAGGGGCGAAAAC- -5'
6486 5' -60.5 NC_001847.1 + 100 0.66 0.720985
Target:  5'- uCCgCCCCUgggUCCGGCgCCCCGCg---- -3'
miRNA:   3'- -GGgGGGGG---GGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 40239 0.66 0.711312
Target:  5'- aCCCCCagCCCCGGCUggCCCGUg---- -3'
miRNA:   3'- gGGGGGg-GGGGUUGAg-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 4940 0.66 0.701574
Target:  5'- gCgCCCCCCCgAGCaaCCUCGCUa--- -3'
miRNA:   3'- gGgGGGGGGGgUUGa-GGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 22004 0.66 0.701574
Target:  5'- uCCUCCCCCUCCucguccgcCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuu------GAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 92142 0.66 0.691781
Target:  5'- gCCCggcgcgCCCCCCCGGCggcguUCCCgGCguugUUGc -3'
miRNA:   3'- gGGG------GGGGGGGUUG-----AGGGgCGaa--AAC- -5'
6486 5' -60.5 NC_001847.1 + 11051 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 11159 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 92531 0.66 0.700597
Target:  5'- gCCCCCCUCCgCGGCggcgccgUCCCUGUc---- -3'
miRNA:   3'- -GGGGGGGGGgGUUG-------AGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 77991 0.66 0.720985
Target:  5'- gCCCCUCgCCCAGCUCgUgGCa---- -3'
miRNA:   3'- gGGGGGGgGGGUUGAGgGgCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 11123 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 6012 0.66 0.720985
Target:  5'- gCCgCCCCUCaCCCuuCUCCCuuuCGCgaUUGg -3'
miRNA:   3'- -GG-GGGGGG-GGGuuGAGGG---GCGaaAAC- -5'
6486 5' -60.5 NC_001847.1 + 2412 0.66 0.701574
Target:  5'- uCgUCCUCCCCCGagggGCcCCCCGCg---- -3'
miRNA:   3'- -GgGGGGGGGGGU----UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 11087 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 10979 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 2648 0.66 0.720985
Target:  5'- uUCgUCCUCCCCGucCUCCCCGUc---- -3'
miRNA:   3'- -GGgGGGGGGGGUu-GAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 36406 0.66 0.711312
Target:  5'- cCCCggCCCCggCCCCGGC-CCCgGCUUc-- -3'
miRNA:   3'- -GGG--GGGG--GGGGUUGaGGGgCGAAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.