miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 135103 0.69 0.505285
Target:  5'- uCCgCCCCCCCCCAAaaacacccCCCCGg----- -3'
miRNA:   3'- -GG-GGGGGGGGGUUga------GGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 135077 0.68 0.572829
Target:  5'- aUCCCCCaCCCC-GC-CCCCGCc---- -3'
miRNA:   3'- gGGGGGG-GGGGuUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 134304 0.66 0.691781
Target:  5'- uCCUCCUCCUCCucCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 131716 0.73 0.29873
Target:  5'- aCCCCCugggcugcgccuggCCCCCCGggcuGCUCuCCCGCUg--- -3'
miRNA:   3'- -GGGGG--------------GGGGGGU----UGAG-GGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 130334 0.7 0.477375
Target:  5'- gCCCCCCUaCCCCGuCUCCCC-Ca---- -3'
miRNA:   3'- -GGGGGGG-GGGGUuGAGGGGcGaaaac -5'
6486 5' -60.5 NC_001847.1 + 130287 0.78 0.166283
Target:  5'- gCCgCCCCCCCCC--CUCCCCuGCgUUUUGa -3'
miRNA:   3'- -GG-GGGGGGGGGuuGAGGGG-CG-AAAAC- -5'
6486 5' -60.5 NC_001847.1 + 129898 0.68 0.572829
Target:  5'- gCCCCCUCCCCCG-CggagaCCUGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGag---GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 129868 0.68 0.563016
Target:  5'- aCCCCCgUCCCCGGgUCUCCGg----- -3'
miRNA:   3'- -GGGGGgGGGGGUUgAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 128468 0.69 0.514745
Target:  5'- cCUCCUCCUCCCucC-CCCCGCUa--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGaGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 128307 1.09 0.001091
Target:  5'- gCCCCCCCCCCCAACUCCCCGCUUUUGu -3'
miRNA:   3'- -GGGGGGGGGGGUUGAGGGGCGAAAAC- -5'
6486 5' -60.5 NC_001847.1 + 127733 0.71 0.397843
Target:  5'- cCCCCCCCCCCCAuaaagguacagcaGCUgcggcggcuugCCCgGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGA-----------GGGgCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 127538 0.76 0.2121
Target:  5'- aCCCCCCCaCCCCA---CCCCGCa---- -3'
miRNA:   3'- -GGGGGGG-GGGGUugaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 127019 0.67 0.662153
Target:  5'- aCCgCCCgCCCCUGGggCCCCGCg---- -3'
miRNA:   3'- -GGgGGG-GGGGGUUgaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 126663 0.66 0.691781
Target:  5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 126534 0.72 0.382338
Target:  5'- uCCCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- -GGGGGG-GGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 126457 0.77 0.183439
Target:  5'- cCCCCCUCCUCUAGCcCCCCGUgugUGg -3'
miRNA:   3'- -GGGGGGGGGGGUUGaGGGGCGaaaAC- -5'
6486 5' -60.5 NC_001847.1 + 126158 0.73 0.336081
Target:  5'- gCCCCCaCCCCCGuCUgCCCGCc---- -3'
miRNA:   3'- gGGGGG-GGGGGUuGAgGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 125919 0.72 0.351036
Target:  5'- gCCCCgCCCCCgCGACUCcuuuuuauugggCCCGCUg--- -3'
miRNA:   3'- -GGGGgGGGGG-GUUGAG------------GGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 124817 0.66 0.701574
Target:  5'- uCCUCCCCCUCCucguccgcCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuu------GAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 124413 0.69 0.543533
Target:  5'- gCCCCgCCCCCCUAAa--CUCGCUg--- -3'
miRNA:   3'- -GGGG-GGGGGGGUUgagGGGCGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.