miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 118562 0.67 0.642273
Target:  5'- aCCCCaCgCCgCCCCGA--CCCCGCUg--- -3'
miRNA:   3'- -GGGG-G-GG-GGGGUUgaGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 1328 0.67 0.642273
Target:  5'- gCUCCCCgagCCCCAGCgccgcgCCCUGCg---- -3'
miRNA:   3'- gGGGGGG---GGGGUUGa-----GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 40636 0.67 0.642273
Target:  5'- uCCCUUUCCCCCAcgUCCgCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUugAGG-GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 104141 0.67 0.642273
Target:  5'- gCUCCCCgagCCCCAGCgccgcgCCCUGCg---- -3'
miRNA:   3'- gGGGGGG---GGGGUUGa-----GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 51193 0.67 0.632318
Target:  5'- gUCUCCgCCCCCGGC-CCCgCGCg---- -3'
miRNA:   3'- -GGGGGgGGGGGUUGaGGG-GCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 80687 0.67 0.632318
Target:  5'- cCCUCCUCCUCgGGCucgUCCCCGCc---- -3'
miRNA:   3'- -GGGGGGGGGGgUUG---AGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 38475 0.67 0.629331
Target:  5'- gCCCCCgcgcacgacgcguaCCCgCCGGC-CCCCGCg---- -3'
miRNA:   3'- -GGGGG--------------GGGgGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 10409 0.67 0.622363
Target:  5'- gUCCUCUCCUCCGcCUCgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 118529 0.67 0.622363
Target:  5'- gCgCCCCCCCCCAAagaCCaCGCa---- -3'
miRNA:   3'- -GgGGGGGGGGGUUgagGG-GCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113222 0.67 0.622363
Target:  5'- gUCCUCUCCUCCGcCUCgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 111726 0.67 0.612415
Target:  5'- aCCCCggacgCCCCgCCGACgaCCCCGCcaagUGa -3'
miRNA:   3'- -GGGG-----GGGGgGGUUGa-GGGGCGaaa-AC- -5'
6486 5' -60.5 NC_001847.1 + 8913 0.67 0.612415
Target:  5'- aCCCCggacgCCCCgCCGACgaCCCCGCcaagUGa -3'
miRNA:   3'- -GGGG-----GGGGgGGUUGa-GGGGCGaaa-AC- -5'
6486 5' -60.5 NC_001847.1 + 107400 0.68 0.602481
Target:  5'- gCCCCCCgCCgCAACcgCCgCCGCg---- -3'
miRNA:   3'- -GGGGGGgGGgGUUGa-GG-GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 102725 0.68 0.592567
Target:  5'- gCCCgCaCCCCCCGGCUgCCCCaagGCg---- -3'
miRNA:   3'- -GGGgG-GGGGGGUUGA-GGGG---CGaaaac -5'
6486 5' -60.5 NC_001847.1 + 102370 0.68 0.592567
Target:  5'- gCCCUCCCCCCAcagggauCUCCUCGa----- -3'
miRNA:   3'- gGGGGGGGGGGUu------GAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 46887 0.68 0.592567
Target:  5'- cCCCCguCCCCgCCCGGCg-CCCGCg---- -3'
miRNA:   3'- -GGGG--GGGG-GGGUUGagGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 47242 0.68 0.592567
Target:  5'- gCCCCgCCCCUguGCaaagCCCCGCc---- -3'
miRNA:   3'- -GGGGgGGGGGguUGa---GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 5874 0.68 0.582681
Target:  5'- uUCCCCUCCCCA--UUCCCGCc---- -3'
miRNA:   3'- gGGGGGGGGGGUugAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 108687 0.68 0.582681
Target:  5'- uUCCCCUCCCCA--UUCCCGCc---- -3'
miRNA:   3'- gGGGGGGGGGGUugAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 39798 0.68 0.582681
Target:  5'- gCCCCgCUCCCCUGGCUgcgccCCCUGCg---- -3'
miRNA:   3'- -GGGG-GGGGGGGUUGA-----GGGGCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.