miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 113864 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 113900 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 113936 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 113972 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 126663 0.66 0.691781
Target:  5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 61927 0.66 0.690799
Target:  5'- cCCCCCUCCUCCGcgucagcggcggcGCggCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGagGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 55604 0.66 0.681941
Target:  5'- gCCCCagCCCCCCCGg--CCCCGaCg---- -3'
miRNA:   3'- -GGGG--GGGGGGGUugaGGGGC-Gaaaac -5'
6486 5' -60.5 NC_001847.1 + 20230 0.66 0.672063
Target:  5'- gCCCCCgUgCCCCAgggGCUcgcCCCCGCg---- -3'
miRNA:   3'- -GGGGG-GgGGGGU---UGA---GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 64347 0.66 0.672063
Target:  5'- -aUCCCCUCCCGGCcCCgCCGCg---- -3'
miRNA:   3'- ggGGGGGGGGGUUGaGG-GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 117084 0.66 0.670083
Target:  5'- cCCUCCCCguCCCCAACcgagacggaaagCUCCGCUg--- -3'
miRNA:   3'- -GGGGGGG--GGGGUUGa-----------GGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 127019 0.67 0.662153
Target:  5'- aCCgCCCgCCCCUGGggCCCCGCg---- -3'
miRNA:   3'- -GGgGGG-GGGGGUUgaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9544 0.67 0.662153
Target:  5'- gCCCCCCaUCCCCAuCcCCCCGa----- -3'
miRNA:   3'- -GGGGGG-GGGGGUuGaGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 102235 0.67 0.662153
Target:  5'- uCCCgUCCgcggCCCCGGCuUCCCCGCc---- -3'
miRNA:   3'- -GGGgGGG----GGGGUUG-AGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 112357 0.67 0.662153
Target:  5'- gCCCCCCaUCCCCAuCcCCCCGa----- -3'
miRNA:   3'- -GGGGGG-GGGGGUuGaGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 82432 0.67 0.661161
Target:  5'- uCCUCCCCUuggucuuCCCGGCaaCCCCGCg---- -3'
miRNA:   3'- -GGGGGGGG-------GGGUUGa-GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 59687 0.67 0.661161
Target:  5'- cCCCUCCCCCCCGgucggcagcgggaACaCCgCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGaGGgGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 82178 0.67 0.661161
Target:  5'- uUCCCCCCCCCCuucACggCCaaagacgCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGu--UGa-GG-------GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 98099 0.67 0.656196
Target:  5'- gCCCCCagCCCaggcuagagugcgagCCCGGCgCCCCGCUc--- -3'
miRNA:   3'- -GGGGG--GGG---------------GGGUUGaGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 92190 0.67 0.652221
Target:  5'- gCCCgCCCCCCCCGcgcGCggcgUCggCCGCUUg-- -3'
miRNA:   3'- -GGG-GGGGGGGGU---UGa---GG--GGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 38316 0.67 0.652221
Target:  5'- gCCCUuuCCCCCCCAAUUa-CCGCa---- -3'
miRNA:   3'- -GGGG--GGGGGGGUUGAggGGCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.