miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 113936 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 265 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 237 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 73826 0.66 0.711312
Target:  5'- gCCCgCCCCgCCCCG-CgcaCCCGCg---- -3'
miRNA:   3'- -GGG-GGGG-GGGGUuGag-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 107753 0.66 0.701574
Target:  5'- gCgCCCCCCCgAGCaaCCUCGCUa--- -3'
miRNA:   3'- gGgGGGGGGGgUUGa-GGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 105225 0.66 0.701574
Target:  5'- uCgUCCUCCCCCGagggGCcCCCCGCg---- -3'
miRNA:   3'- -GgGGGGGGGGGU----UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 293 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 113972 0.66 0.691781
Target:  5'- cCCUCCCUCCCCucCUUCCC-CUc--- -3'
miRNA:   3'- -GGGGGGGGGGGuuGAGGGGcGAaaac -5'
6486 5' -60.5 NC_001847.1 + 126663 0.66 0.691781
Target:  5'- gCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- gGGGGgGGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 63728 0.66 0.701574
Target:  5'- aCCCUCCCCCCGGCcgagcaacagCgCCGCc---- -3'
miRNA:   3'- gGGGGGGGGGGUUGa---------GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 40636 0.67 0.642273
Target:  5'- uCCCUUUCCCCCAcgUCCgCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUugAGG-GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 38475 0.67 0.629331
Target:  5'- gCCCCCgcgcacgacgcguaCCCgCCGGC-CCCCGCg---- -3'
miRNA:   3'- -GGGGG--------------GGGgGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113222 0.67 0.622363
Target:  5'- gUCCUCUCCUCCGcCUCgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 111726 0.67 0.612415
Target:  5'- aCCCCggacgCCCCgCCGACgaCCCCGCcaagUGa -3'
miRNA:   3'- -GGGG-----GGGGgGGUUGa-GGGGCGaaa-AC- -5'
6486 5' -60.5 NC_001847.1 + 104141 0.67 0.642273
Target:  5'- gCUCCCCgagCCCCAGCgccgcgCCCUGCg---- -3'
miRNA:   3'- gGGGGGG---GGGGUUGa-----GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 98099 0.67 0.656196
Target:  5'- gCCCCCagCCCaggcuagagugcgagCCCGGCgCCCCGCUc--- -3'
miRNA:   3'- -GGGGG--GGG---------------GGGUUGaGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 82432 0.67 0.661161
Target:  5'- uCCUCCCCUuggucuuCCCGGCaaCCCCGCg---- -3'
miRNA:   3'- -GGGGGGGG-------GGGUUGa-GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 59687 0.67 0.661161
Target:  5'- cCCCUCCCCCCCGgucggcagcgggaACaCCgCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGaGGgGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 102235 0.67 0.662153
Target:  5'- uCCCgUCCgcggCCCCGGCuUCCCCGCc---- -3'
miRNA:   3'- -GGGgGGG----GGGGUUG-AGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 118562 0.67 0.642273
Target:  5'- aCCCCaCgCCgCCCCGA--CCCCGCUg--- -3'
miRNA:   3'- -GGGG-G-GG-GGGGUUgaGGGGCGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.