miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 126158 0.73 0.336081
Target:  5'- gCCCCCaCCCCCGuCUgCCCGCc---- -3'
miRNA:   3'- gGGGGG-GGGGGUuGAgGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 23345 0.73 0.336081
Target:  5'- gCCCCCaCCCCCGuCUgCCCGCc---- -3'
miRNA:   3'- gGGGGG-GGGGGUuGAgGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 10762 0.73 0.336081
Target:  5'- gCCCCCUCUCCCGcccuCUCCCCGg----- -3'
miRNA:   3'- -GGGGGGGGGGGUu---GAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 113575 0.73 0.336081
Target:  5'- gCCCCCUCUCCCGcccuCUCCCCGg----- -3'
miRNA:   3'- -GGGGGGGGGGGUu---GAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 9661 0.72 0.351036
Target:  5'- gCCCCCauCCCCCCGAuccCUCgCCCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUU---GAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 125919 0.72 0.351036
Target:  5'- gCCCCgCCCCCgCGACUCcuuuuuauugggCCCGCUg--- -3'
miRNA:   3'- -GGGGgGGGGG-GUUGAG------------GGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 112474 0.72 0.351036
Target:  5'- gCCCCCauCCCCCCGAuccCUCgCCCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUU---GAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 21101 0.72 0.358688
Target:  5'- cCCCUCCCCCCCGuC-CgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGaG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 123914 0.72 0.358688
Target:  5'- cCCCUCCCCCCCGuC-CgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGaG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 112386 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 112430 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9573 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 9617 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 23721 0.72 0.382338
Target:  5'- uCCCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- -GGGGGG-GGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 126534 0.72 0.382338
Target:  5'- uCCCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- -GGGGGG-GGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 24921 0.71 0.389632
Target:  5'- cCCCCCCCCCCCAuaaagguacagcaGCUgggcggcuugCCCgGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGA----------GGGgCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 120039 0.71 0.390448
Target:  5'- -gCCCUCCCCCGACcgCCCC-CUUUg- -3'
miRNA:   3'- ggGGGGGGGGGUUGa-GGGGcGAAAac -5'
6486 5' -60.5 NC_001847.1 + 127733 0.71 0.397843
Target:  5'- cCCCCCCCCCCCAuaaagguacagcaGCUgcggcggcuugCCCgGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGA-----------GGGgCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 33994 0.71 0.39867
Target:  5'- cCCCggCCCCggCCCCAGC-CCCCGCg---- -3'
miRNA:   3'- -GGG--GGGG--GGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 102202 0.71 0.39867
Target:  5'- cCUCCgCCCCCCCGGCcCCgCCGCc---- -3'
miRNA:   3'- -GGGG-GGGGGGGUUGaGG-GGCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.