miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 5' -60.5 NC_001847.1 + 109237 0.78 0.166283
Target:  5'- cCCCCCUCCCCCucGCaCCCCGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGu-UGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 130287 0.78 0.166283
Target:  5'- gCCgCCCCCCCCC--CUCCCCuGCgUUUUGa -3'
miRNA:   3'- -GG-GGGGGGGGGuuGAGGGG-CG-AAAAC- -5'
6486 5' -60.5 NC_001847.1 + 110374 0.79 0.143244
Target:  5'- gCCCCCCCCCCucccCUCCCCcCUgUUGa -3'
miRNA:   3'- gGGGGGGGGGGuu--GAGGGGcGAaAAC- -5'
6486 5' -60.5 NC_001847.1 + 109015 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 108921 0.86 0.043542
Target:  5'- aCCCCCUCCCCAuugggACUCCCCGCUUc-- -3'
miRNA:   3'- gGGGGGGGGGGU-----UGAGGGGCGAAaac -5'
6486 5' -60.5 NC_001847.1 + 119815 0.73 0.300756
Target:  5'- aCCCCCCgCCC-GC-CCCCGCUa--- -3'
miRNA:   3'- gGGGGGGgGGGuUGaGGGGCGAaaac -5'
6486 5' -60.5 NC_001847.1 + 103541 0.73 0.321598
Target:  5'- gCCCCCUCCCUccCUUCCCGCg---- -3'
miRNA:   3'- gGGGGGGGGGGuuGAGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 102202 0.71 0.39867
Target:  5'- cCUCCgCCCCCCCGGCcCCgCCGCc---- -3'
miRNA:   3'- -GGGG-GGGGGGGUUGaGG-GGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 127733 0.71 0.397843
Target:  5'- cCCCCCCCCCCCAuaaagguacagcaGCUgcggcggcuugCCCgGCa---- -3'
miRNA:   3'- -GGGGGGGGGGGU-------------UGA-----------GGGgCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 120039 0.71 0.390448
Target:  5'- -gCCCUCCCCCGACcgCCCC-CUUUg- -3'
miRNA:   3'- ggGGGGGGGGGUUGa-GGGGcGAAAac -5'
6486 5' -60.5 NC_001847.1 + 126534 0.72 0.382338
Target:  5'- uCCCCCCgCCCCCGGCcgagCgCCGCc---- -3'
miRNA:   3'- -GGGGGG-GGGGGUUGa---GgGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 112430 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 112386 0.72 0.366456
Target:  5'- gCCCCCauCCCCCCGAUcCCUCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 123914 0.72 0.358688
Target:  5'- cCCCUCCCCCCCGuC-CgCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGUuGaG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 112474 0.72 0.351036
Target:  5'- gCCCCCauCCCCCCGAuccCUCgCCCGCc---- -3'
miRNA:   3'- -GGGGG--GGGGGGUU---GAG-GGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 124272 0.73 0.336081
Target:  5'- cCCCCUUCCCCCucccgCCCCGCg---- -3'
miRNA:   3'- -GGGGGGGGGGGuuga-GGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 126158 0.73 0.336081
Target:  5'- gCCCCCaCCCCCGuCUgCCCGCc---- -3'
miRNA:   3'- gGGGGG-GGGGGUuGAgGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 113575 0.73 0.336081
Target:  5'- gCCCCCUCUCCCGcccuCUCCCCGg----- -3'
miRNA:   3'- -GGGGGGGGGGGUu---GAGGGGCgaaaac -5'
6486 5' -60.5 NC_001847.1 + 81287 0.73 0.336081
Target:  5'- gCCCCacagcaCCCCCUGAC-CCCCGCg---- -3'
miRNA:   3'- -GGGGg-----GGGGGGUUGaGGGGCGaaaac -5'
6486 5' -60.5 NC_001847.1 + 103006 0.73 0.32878
Target:  5'- gCCCCCgCCCCC-GC-CCCCGCc---- -3'
miRNA:   3'- -GGGGGgGGGGGuUGaGGGGCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.