miRNA display CGI


Results 81 - 100 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 14765 0.66 0.999389
Target:  5'- gCCCGC-GGCGUGGuAGcGCAGcAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32326 0.66 0.999389
Target:  5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3'
miRNA:   3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31441 0.66 0.999389
Target:  5'- aCgUCGCUGGCGCu--GGUGaucgugGGCg -3'
miRNA:   3'- -GgGGCGACCGCGuuuUUAUguua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 30382 0.66 0.999389
Target:  5'- --gCGCUGGUGCGggcgcAGAcgGCGcUGGCg -3'
miRNA:   3'- gggGCGACCGCGU-----UUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 134512 0.66 0.999389
Target:  5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3'
miRNA:   3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 88389 0.67 0.999241
Target:  5'- gCCCCGCgcggcgggcgGGCGCGccgucGGGUACcagggGGCc -3'
miRNA:   3'- -GGGGCGa---------CCGCGUu----UUUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 77656 0.67 0.999241
Target:  5'- gCCUucgaCGCgGGCGCcGAGGUACugcUGGCc -3'
miRNA:   3'- -GGG----GCGaCCGCGuUUUUAUGuu-AUCG- -5'
6487 3' -47.4 NC_001847.1 + 115089 0.67 0.999241
Target:  5'- aCgCCGCUccCGCAAAcGUACAGUccAGCu -3'
miRNA:   3'- -GgGGCGAccGCGUUUuUAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 130805 0.67 0.999241
Target:  5'- gCCgaGCUGGCGCcc---UACA-UGGCg -3'
miRNA:   3'- -GGggCGACCGCGuuuuuAUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 28878 0.67 0.999241
Target:  5'- --gCGCUGGgGCGAGu-UGCAG-AGCa -3'
miRNA:   3'- gggGCGACCgCGUUUuuAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 45053 0.67 0.999241
Target:  5'- cCCCCGCggUGGCGUcccaGAGccAGUAUuuguUGGCc -3'
miRNA:   3'- -GGGGCG--ACCGCG----UUU--UUAUGuu--AUCG- -5'
6487 3' -47.4 NC_001847.1 + 58886 0.67 0.999241
Target:  5'- gUCUCGUUGGCGa---GGUGCGccuccAUGGCg -3'
miRNA:   3'- -GGGGCGACCGCguuuUUAUGU-----UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 69622 0.67 0.999241
Target:  5'- cCCUCGgUGaGCGCGGAGA-GCGcgAGUc -3'
miRNA:   3'- -GGGGCgAC-CGCGUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 113960 0.67 0.999241
Target:  5'- aCgCCGCcgGGCGCGucgccGCAGaAGCg -3'
miRNA:   3'- -GgGGCGa-CCGCGUuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 128109 0.67 0.999241
Target:  5'- gCCCaaacgacguggCGCUGGCGCuggcGGAUGCGc-GGCc -3'
miRNA:   3'- -GGG-----------GCGACCGCGuu--UUUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 77494 0.67 0.999241
Target:  5'- gCCCGCcGGCcCGAGu---CGGUGGCc -3'
miRNA:   3'- gGGGCGaCCGcGUUUuuauGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 53575 0.67 0.999138
Target:  5'- gCCgCGCUGG-GCGAcguGGAUgccuuuuugcgggccACGGUGGCg -3'
miRNA:   3'- -GGgGCGACCgCGUU---UUUA---------------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 66875 0.67 0.999063
Target:  5'- gUCCCGCUcGCGCGcgGGUACucgucGGUc -3'
miRNA:   3'- -GGGGCGAcCGCGUuuUUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 78403 0.67 0.999063
Target:  5'- aCCCCGCcgcugcgGGCGCGc---UGC--UGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuuAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 108255 0.67 0.999063
Target:  5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.