miRNA display CGI


Results 61 - 80 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 114859 0.66 0.999511
Target:  5'- aCCaaaCGCcGGCGCu-GGGUGCGgccuuuaaaggAUAGCa -3'
miRNA:   3'- -GGg--GCGaCCGCGuuUUUAUGU-----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 50799 0.66 0.999511
Target:  5'- aCCUCGC-GGCGCugcggccGGUACGGUuuuacgggggGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGuuu----UUAUGUUA----------UCG- -5'
6487 3' -47.4 NC_001847.1 + 21615 0.66 0.999489
Target:  5'- aCUCGCUGGCgGCGcuuggccgGCGcgGGCc -3'
miRNA:   3'- gGGGCGACCG-CGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 124428 0.66 0.999489
Target:  5'- aCUCGCUGGCgGCGcuuggccgGCGcgGGCc -3'
miRNA:   3'- gGGGCGACCG-CGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 73680 0.66 0.999489
Target:  5'- gCCCGCgccaucgaugaaGGCGCGGcccggcgcGUGCAGUAcGCg -3'
miRNA:   3'- gGGGCGa-----------CCGCGUUuu------UAUGUUAU-CG- -5'
6487 3' -47.4 NC_001847.1 + 55399 0.66 0.999477
Target:  5'- aUCgCGCUGGCGCucgccacguuCAAgGGCa -3'
miRNA:   3'- -GGgGCGACCGCGuuuuuau---GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 11909 0.66 0.999465
Target:  5'- uCCgCGCUGGCGCGGcaucgucuuCA--AGCg -3'
miRNA:   3'- -GGgGCGACCGCGUUuuuau----GUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 60742 0.66 0.999389
Target:  5'- --gCGCgGGCGCGGc---GCGGUGGCg -3'
miRNA:   3'- gggGCGaCCGCGUUuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 69425 0.66 0.999389
Target:  5'- uUCCUGC-GGCuCAGcGcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGcGUUuUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 134512 0.66 0.999389
Target:  5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3'
miRNA:   3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 54580 0.66 0.999389
Target:  5'- gCCCCGCgGGCu--GGGcgGCGcUGGCg -3'
miRNA:   3'- -GGGGCGaCCGcguUUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 44 0.66 0.999389
Target:  5'- uUCCGCgcGGCGCGugcauUGCGGcgGGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuu-AUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 51963 0.66 0.999389
Target:  5'- aCCCCGC-GGCagugauGCAcuGGGUGCGccGGCg -3'
miRNA:   3'- -GGGGCGaCCG------CGUu-UUUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31441 0.66 0.999389
Target:  5'- aCgUCGCUGGCGCu--GGUGaucgugGGCg -3'
miRNA:   3'- -GgGGCGACCGCGuuuUUAUguua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 32326 0.66 0.999389
Target:  5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3'
miRNA:   3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30382 0.66 0.999389
Target:  5'- --gCGCUGGUGCGggcgcAGAcgGCGcUGGCg -3'
miRNA:   3'- gggGCGACCGCGU-----UUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 64223 0.66 0.999389
Target:  5'- gCCCggGCggcGGCGCGAagcugcccGAGUGCcgcgAGUAGCg -3'
miRNA:   3'- gGGG--CGa--CCGCGUU--------UUUAUG----UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 14765 0.66 0.999389
Target:  5'- gCCCGC-GGCGUGGuAGcGCAGcAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131163 0.66 0.999389
Target:  5'- gCCgCGCUGGCGCugcuc-ACGGcccaccucgcgcUGGCg -3'
miRNA:   3'- -GGgGCGACCGCGuuuuuaUGUU------------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 134650 0.66 0.999389
Target:  5'- gCCgGCagcaGGCGCGGAG--GCGcgGGCa -3'
miRNA:   3'- gGGgCGa---CCGCGUUUUuaUGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.