miRNA display CGI


Results 41 - 60 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 23711 0.66 0.999612
Target:  5'- --gCGCggucGGCGCAGAGGU-CGAUcaGGCg -3'
miRNA:   3'- gggGCGa---CCGCGUUUUUAuGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 21847 0.66 0.999612
Target:  5'- gCUgCGCUcGGUGCAGcagguGGUGCGggGGCu -3'
miRNA:   3'- -GGgGCGA-CCGCGUUu----UUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50757 0.66 0.999612
Target:  5'- gCCCCGguUUGGCGCGccAAcGCGG-AGCc -3'
miRNA:   3'- -GGGGC--GACCGCGUuuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30426 0.66 0.999612
Target:  5'- gCUCGUggcgGGCGCGGAGGcGCcggGGCu -3'
miRNA:   3'- gGGGCGa---CCGCGUUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 33524 0.66 0.999612
Target:  5'- gCCgCCGCggaGGCGCcgg---GCGcgGGCg -3'
miRNA:   3'- -GG-GGCGa--CCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 36624 0.66 0.999612
Target:  5'- aCCgCGCggugGGCGaCAAGcugGCuGUGGCg -3'
miRNA:   3'- -GGgGCGa---CCGC-GUUUuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 16467 0.66 0.999612
Target:  5'- gCCCGC-GGCGCAGAGcgcggACAccucucuuGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUUua---UGUuau-----CG- -5'
6487 3' -47.4 NC_001847.1 + 43276 0.66 0.999603
Target:  5'- aCCUGCUGcgacgccgcgcguGCGCGggcugcGGAGUACGA-AGCg -3'
miRNA:   3'- gGGGCGAC-------------CGCGU------UUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 40275 0.66 0.999574
Target:  5'- uCCUCGaaGGUGCGGAuguugacaaagguGUACAcggGUAGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUUu------------UAUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 41023 0.66 0.999511
Target:  5'- gUCCUGCaacgGGCGCGccGcgGCGuuUAGCa -3'
miRNA:   3'- -GGGGCGa---CCGCGUuuUuaUGUu-AUCG- -5'
6487 3' -47.4 NC_001847.1 + 80338 0.66 0.999511
Target:  5'- gCCCgCGCUcgccagcgcGGCGCGGAAGgcgcgGCGu--GCg -3'
miRNA:   3'- -GGG-GCGA---------CCGCGUUUUUa----UGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 114859 0.66 0.999511
Target:  5'- aCCaaaCGCcGGCGCu-GGGUGCGgccuuuaaaggAUAGCa -3'
miRNA:   3'- -GGg--GCGaCCGCGuuUUUAUGU-----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 18120 0.66 0.999511
Target:  5'- cCCCCGCcGG-GCAG----ACAggAGCg -3'
miRNA:   3'- -GGGGCGaCCgCGUUuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 35302 0.66 0.999511
Target:  5'- gCCCCGCcgagcGGCGCGcgcuGGAaGCG--GGCg -3'
miRNA:   3'- -GGGGCGa----CCGCGUu---UUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50799 0.66 0.999511
Target:  5'- aCCUCGC-GGCGCugcggccGGUACGGUuuuacgggggGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGuuu----UUAUGUUA----------UCG- -5'
6487 3' -47.4 NC_001847.1 + 71505 0.66 0.999511
Target:  5'- uCCgCGUUGaucuCGCGGAG--GCAGUAGCg -3'
miRNA:   3'- -GGgGCGACc---GCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 103862 0.66 0.999511
Target:  5'- gCCCGcCUGGU-CGGuGAUGCGGUuuGGCa -3'
miRNA:   3'- gGGGC-GACCGcGUUuUUAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 115059 0.66 0.999511
Target:  5'- gCUCCaGCUGGCGCucgccccGAGcGCAGgcagcgAGCg -3'
miRNA:   3'- -GGGG-CGACCGCGuu-----UUUaUGUUa-----UCG- -5'
6487 3' -47.4 NC_001847.1 + 60842 0.66 0.999511
Target:  5'- gCCCGC-GGCGCugcgcgGCGccagGGCg -3'
miRNA:   3'- gGGGCGaCCGCGuuuuuaUGUua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 48127 0.66 0.999511
Target:  5'- gUCCCGCgaGGCGCGGcccAGGUAaccgccgGGCc -3'
miRNA:   3'- -GGGGCGa-CCGCGUU---UUUAUguua---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.