miRNA display CGI


Results 41 - 60 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 11860 0.77 0.802295
Target:  5'- gCCCUGCgggcGGCGCGAGcGUAUAAaAGCc -3'
miRNA:   3'- -GGGGCGa---CCGCGUUUuUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32046 0.78 0.752603
Target:  5'- cCCCCGCgaaagguccggGGCGCGGAGAcgGCGggGGCc -3'
miRNA:   3'- -GGGGCGa----------CCGCGUUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 9030 0.78 0.752603
Target:  5'- cCCCUGCUagacgcgaugcGGCGCGAGGggGCAAUGGa -3'
miRNA:   3'- -GGGGCGA-----------CCGCGUUUUuaUGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 116428 0.81 0.608288
Target:  5'- gCCCGCUGGCGCuccccgcgGCGcUGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuua--UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 67322 0.86 0.354242
Target:  5'- gCCCCGCcGGCGUAuAGGUGCAGcAGCa -3'
miRNA:   3'- -GGGGCGaCCGCGUuUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 106746 0.75 0.887317
Target:  5'- gCCCgCGCUGGCGCcgcg--GCGGggggGGCg -3'
miRNA:   3'- -GGG-GCGACCGCGuuuuuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 108476 0.75 0.894512
Target:  5'- gCCCGCccaGGCGCGAAGGUGgGccGGCc -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34812 0.72 0.959848
Target:  5'- -gCCGCUGGCGCGGcAGgcCGAccgGGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuUUauGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 99597 0.72 0.955877
Target:  5'- gCCaaGCuUGGCGCGGGGcUGCAGUccGGCg -3'
miRNA:   3'- -GGggCG-ACCGCGUUUUuAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 13337 0.73 0.952081
Target:  5'- aCCUGCUGGCGCuacggcacuCAGaGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuuau--GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 127194 0.73 0.951646
Target:  5'- aCCCGCaUGGCGCGAAcuccgGCGcgGcGCg -3'
miRNA:   3'- gGGGCG-ACCGCGUUUuua--UGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 60461 0.73 0.951646
Target:  5'- cCCCCGUcgGGCGCGucc--GCcAUGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUuuuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 3057 0.73 0.951646
Target:  5'- -gCCGCaGGCGCAGGuugugcucguAGUGCAGcAGCg -3'
miRNA:   3'- ggGGCGaCCGCGUUU----------UUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 121913 0.73 0.942392
Target:  5'- gCCCCGCUGGCcaucGCGGAGcucGCcg-AGCg -3'
miRNA:   3'- -GGGGCGACCG----CGUUUUua-UGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 20760 0.73 0.937361
Target:  5'- gCCUCGCcuucgucGGCGCGcAGAUGCGAggggGGCu -3'
miRNA:   3'- -GGGGCGa------CCGCGUuUUUAUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 64463 0.74 0.932057
Target:  5'- gCCCGCggcGGCGCGGGGGgccgaaGCAGggAGCa -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUa-----UGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 72765 0.74 0.914506
Target:  5'- gUCCGCUGGCGCu--GAcGCAccAGCu -3'
miRNA:   3'- gGGGCGACCGCGuuuUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 51852 0.74 0.914506
Target:  5'- gCCgaGCUGGCGCAGuuuUACA-UGGCc -3'
miRNA:   3'- -GGggCGACCGCGUUuuuAUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 134021 0.74 0.908109
Target:  5'- gCCgCCGCUGGUGCuGGAGgccGCGGcGGCg -3'
miRNA:   3'- -GG-GGCGACCGCGuUUUUa--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 72180 0.75 0.900079
Target:  5'- aCCCGCUGGUGCAGucgguc-GUGGUg -3'
miRNA:   3'- gGGGCGACCGCGUUuuuauguUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.