miRNA display CGI


Results 41 - 60 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 48127 0.66 0.999511
Target:  5'- gUCCCGCgaGGCGCGGcccAGGUAaccgccgGGCc -3'
miRNA:   3'- -GGGGCGa-CCGCGUU---UUUAUguua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 14943 0.66 0.999748
Target:  5'- -aCCGCUGGCuGCuguGGUucauggacgccuCGAUGGCa -3'
miRNA:   3'- ggGGCGACCG-CGuuuUUAu-----------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 32326 0.66 0.999389
Target:  5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3'
miRNA:   3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 3141 0.66 0.99976
Target:  5'- gCCCCGCgagcaGCGUGGAGcaGCAGUuaacGCa -3'
miRNA:   3'- -GGGGCGac---CGCGUUUUuaUGUUAu---CG- -5'
6487 3' -47.4 NC_001847.1 + 18120 0.66 0.999511
Target:  5'- cCCCCGCcGG-GCAG----ACAggAGCg -3'
miRNA:   3'- -GGGGCGaCCgCGUUuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 23711 0.66 0.999612
Target:  5'- --gCGCggucGGCGCAGAGGU-CGAUcaGGCg -3'
miRNA:   3'- gggGCGa---CCGCGUUUUUAuGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 10442 0.66 0.999694
Target:  5'- cCCCCGCgcccggcuccccUGGCcGCGuugcuggagcGAAUGCAGgccgAGCu -3'
miRNA:   3'- -GGGGCG------------ACCG-CGUu---------UUUAUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 69959 0.66 0.99976
Target:  5'- gUCCGCgGGCGCGAccAUAaacucCAGaGGCa -3'
miRNA:   3'- gGGGCGaCCGCGUUuuUAU-----GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 37475 0.66 0.999687
Target:  5'- aCUCGCUgGGCGCAcagacccAGAGcUACGAcgccuuuuUGGCg -3'
miRNA:   3'- gGGGCGA-CCGCGU-------UUUU-AUGUU--------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 35589 0.66 0.999612
Target:  5'- --gCGCcGGCGCAAGGcUGCGGUAcaucGCa -3'
miRNA:   3'- gggGCGaCCGCGUUUUuAUGUUAU----CG- -5'
6487 3' -47.4 NC_001847.1 + 78295 0.66 0.99976
Target:  5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3'
miRNA:   3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 124136 0.66 0.999694
Target:  5'- gCCCUGCgccUGGCucuGCuGGGAGUGCAGgcGCc -3'
miRNA:   3'- -GGGGCG---ACCG---CG-UUUUUAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 70574 0.66 0.999694
Target:  5'- gCCCCGC-GGCcCGAGGcaGCgGAUGGUg -3'
miRNA:   3'- -GGGGCGaCCGcGUUUUuaUG-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 1980 0.66 0.999694
Target:  5'- gCCCGCgcaGGUagcagGCAGAAAagGCGcUAGCu -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUUa-UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 118470 0.66 0.99976
Target:  5'- gCCUGC-GGCGCAAG---GCccgGGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30426 0.66 0.999612
Target:  5'- gCUCGUggcgGGCGCGGAGGcGCcggGGCu -3'
miRNA:   3'- gGGGCGa---CCGCGUUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 121967 0.66 0.99976
Target:  5'- gUCCGgUGGCGUGAAc-UGC-GUGGCu -3'
miRNA:   3'- gGGGCgACCGCGUUUuuAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 15540 0.66 0.99976
Target:  5'- -gCUGCUGGCGCc--GGUGCGcgcGCg -3'
miRNA:   3'- ggGGCGACCGCGuuuUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 76248 0.66 0.999612
Target:  5'- gCCCGC-GGCGCAuuugccGUGCuugccgcAGCa -3'
miRNA:   3'- gGGGCGaCCGCGUuuu---UAUGuua----UCG- -5'
6487 3' -47.4 NC_001847.1 + 81963 0.66 0.99976
Target:  5'- -aCCGCgGGCGCGcucaucACGcgGGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuuuua-UGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.