miRNA display CGI


Results 21 - 40 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 31441 0.66 0.999389
Target:  5'- aCgUCGCUGGCGCu--GGUGaucgugGGCg -3'
miRNA:   3'- -GgGGCGACCGCGuuuUUAUguua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 60742 0.66 0.999389
Target:  5'- --gCGCgGGCGCGGc---GCGGUGGCg -3'
miRNA:   3'- gggGCGaCCGCGUUuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 60842 0.66 0.999511
Target:  5'- gCCCGC-GGCGCugcgcgGCGccagGGCg -3'
miRNA:   3'- gGGGCGaCCGCGuuuuuaUGUua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 16467 0.66 0.999612
Target:  5'- gCCCGC-GGCGCAGAGcgcggACAccucucuuGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUUua---UGUuau-----CG- -5'
6487 3' -47.4 NC_001847.1 + 68062 0.66 0.999694
Target:  5'- gCCUCGC-GGCGCGcc--UGCGGcggGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGUuuuuAUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 54580 0.66 0.999389
Target:  5'- gCCCCGCgGGCu--GGGcgGCGcUGGCg -3'
miRNA:   3'- -GGGGCGaCCGcguUUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 124428 0.66 0.999489
Target:  5'- aCUCGCUGGCgGCGcuuggccgGCGcgGGCc -3'
miRNA:   3'- gGGGCGACCG-CGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 18120 0.66 0.999511
Target:  5'- cCCCCGCcGG-GCAG----ACAggAGCg -3'
miRNA:   3'- -GGGGCGaCCgCGUUuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 14943 0.66 0.999748
Target:  5'- -aCCGCUGGCuGCuguGGUucauggacgccuCGAUGGCa -3'
miRNA:   3'- ggGGCGACCG-CGuuuUUAu-----------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 35302 0.66 0.999511
Target:  5'- gCCCCGCcgagcGGCGCGcgcuGGAaGCG--GGCg -3'
miRNA:   3'- -GGGGCGa----CCGCGUu---UUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 37475 0.66 0.999687
Target:  5'- aCUCGCUgGGCGCAcagacccAGAGcUACGAcgccuuuuUGGCg -3'
miRNA:   3'- gGGGCGA-CCGCGU-------UUUU-AUGUU--------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 69425 0.66 0.999389
Target:  5'- uUCCUGC-GGCuCAGcGcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGcGUUuUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 20042 0.66 0.999694
Target:  5'- gCCgCCGCccugGGCGCGggcaAAAAUGCGcucGCu -3'
miRNA:   3'- -GG-GGCGa---CCGCGU----UUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 21847 0.66 0.999612
Target:  5'- gCUgCGCUcGGUGCAGcagguGGUGCGggGGCu -3'
miRNA:   3'- -GGgGCGA-CCGCGUUu----UUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 1980 0.66 0.999694
Target:  5'- gCCCGCgcaGGUagcagGCAGAAAagGCGcUAGCu -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUUa-UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 74034 0.66 0.999694
Target:  5'- -gCCGCUGGCGgAcgug-GCGcUGGCc -3'
miRNA:   3'- ggGGCGACCGCgUuuuuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 43276 0.66 0.999603
Target:  5'- aCCUGCUGcgacgccgcgcguGCGCGggcugcGGAGUACGA-AGCg -3'
miRNA:   3'- gGGGCGAC-------------CGCGU------UUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 81963 0.66 0.99976
Target:  5'- -aCCGCgGGCGCGcucaucACGcgGGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuuuua-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 36624 0.66 0.999612
Target:  5'- aCCgCGCggugGGCGaCAAGcugGCuGUGGCg -3'
miRNA:   3'- -GGgGCGa---CCGC-GUUUuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 32326 0.66 0.999389
Target:  5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3'
miRNA:   3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.