miRNA display CGI


Results 21 - 40 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 8015 0.76 0.864206
Target:  5'- cCCCCGCgcgGGCa-AAAAAUcCAAUGGCg -3'
miRNA:   3'- -GGGGCGa--CCGcgUUUUUAuGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 40246 0.76 0.864206
Target:  5'- gCCCCgGCUGGCccGUGGcgGUGCGGUAGUc -3'
miRNA:   3'- -GGGG-CGACCG--CGUUuuUAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 46598 0.75 0.870587
Target:  5'- gCCCCGCcGGCGCGGccucgcggcGCAcgAGCg -3'
miRNA:   3'- -GGGGCGaCCGCGUUuuua-----UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 106746 0.75 0.887317
Target:  5'- gCCCgCGCUGGCGCcgcg--GCGGggggGGCg -3'
miRNA:   3'- -GGG-GCGACCGCGuuuuuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 3933 0.75 0.887317
Target:  5'- gCCCgCGCUGGCGCcgcg--GCGGggggGGCg -3'
miRNA:   3'- -GGG-GCGACCGCGuuuuuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 108476 0.75 0.894512
Target:  5'- gCCCGCccaGGCGCGAAGGUGgGccGGCc -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 5663 0.75 0.894512
Target:  5'- gCCCGCccaGGCGCGAAGGUGgGccGGCc -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 72180 0.75 0.900079
Target:  5'- aCCCGCUGGUGCAGucgguc-GUGGUg -3'
miRNA:   3'- gGGGCGACCGCGUUuuuauguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 18836 0.75 0.901444
Target:  5'- aCCaCGUUGGCGUGguccAAGGUucGCAGUAGCa -3'
miRNA:   3'- gGG-GCGACCGCGU----UUUUA--UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85335 0.74 0.908109
Target:  5'- gCCCGCUGGCGCGcguuAAAggGCucUAGg -3'
miRNA:   3'- gGGGCGACCGCGU----UUUuaUGuuAUCg -5'
6487 3' -47.4 NC_001847.1 + 47314 0.74 0.908109
Target:  5'- gCCCGCcGGCGUGAuguUGCAGcgGGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUuuuAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 31208 0.74 0.908109
Target:  5'- gCCgCCGCUGGUGCuGGAGgccGCGGcGGCg -3'
miRNA:   3'- -GG-GGCGACCGCGuUUUUa--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134021 0.74 0.908109
Target:  5'- gCCgCCGCUGGUGCuGGAGgccGCGGcGGCg -3'
miRNA:   3'- -GG-GGCGACCGCGuUUUUa--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 72765 0.74 0.914506
Target:  5'- gUCCGCUGGCGCu--GAcGCAccAGCu -3'
miRNA:   3'- gGGGCGACCGCGuuuUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 51852 0.74 0.914506
Target:  5'- gCCgaGCUGGCGCAGuuuUACA-UGGCc -3'
miRNA:   3'- -GGggCGACCGCGUUuuuAUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85422 0.74 0.92063
Target:  5'- gCCUCGCcGGCGCccacuUGCAcgGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGuuuuuAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 33779 0.74 0.92063
Target:  5'- cCCCCGC-GGCGCAAGcgcgcgcAUGCAGccccgAGCc -3'
miRNA:   3'- -GGGGCGaCCGCGUUUu------UAUGUUa----UCG- -5'
6487 3' -47.4 NC_001847.1 + 15637 0.74 0.92063
Target:  5'- cCCCCG-UGGCGCAuGAAc-CAGUAGUc -3'
miRNA:   3'- -GGGGCgACCGCGUuUUUauGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 95776 0.74 0.92063
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCg -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 116980 0.74 0.926481
Target:  5'- gCCCGCUGGgGCGA----GC-GUGGCu -3'
miRNA:   3'- gGGGCGACCgCGUUuuuaUGuUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.