miRNA display CGI


Results 21 - 40 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 68062 0.66 0.999694
Target:  5'- gCCUCGC-GGCGCGcc--UGCGGcggGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGUuuuuAUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 1980 0.66 0.999694
Target:  5'- gCCCGCgcaGGUagcagGCAGAAAagGCGcUAGCu -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUUa-UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 124136 0.66 0.999694
Target:  5'- gCCCUGCgccUGGCucuGCuGGGAGUGCAGgcGCc -3'
miRNA:   3'- -GGGGCG---ACCG---CG-UUUUUAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 132321 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29508 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 14112 0.66 0.999694
Target:  5'- gCCaGUUGGCGCcGGAA-GCGAgcgGGCg -3'
miRNA:   3'- gGGgCGACCGCGuUUUUaUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 70574 0.66 0.999694
Target:  5'- gCCCCGC-GGCcCGAGGcaGCgGAUGGUg -3'
miRNA:   3'- -GGGGCGaCCGcGUUUUuaUG-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 37475 0.66 0.999687
Target:  5'- aCUCGCUgGGCGCAcagacccAGAGcUACGAcgccuuuuUGGCg -3'
miRNA:   3'- gGGGCGA-CCGCGU-------UUUU-AUGUU--------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 19167 0.66 0.999687
Target:  5'- gCCCGUUGuuaccccGCGCAGcAcgGCGggGGCg -3'
miRNA:   3'- gGGGCGAC-------CGCGUUuUuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31365 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134178 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30426 0.66 0.999612
Target:  5'- gCUCGUggcgGGCGCGGAGGcGCcggGGCu -3'
miRNA:   3'- gGGGCGa---CCGCGUUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 21847 0.66 0.999612
Target:  5'- gCUgCGCUcGGUGCAGcagguGGUGCGggGGCu -3'
miRNA:   3'- -GGgGCGA-CCGCGUUu----UUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 2611 0.66 0.999612
Target:  5'- gCCCGCc-GCGCcGGAGGUGCuucGGCg -3'
miRNA:   3'- gGGGCGacCGCG-UUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 33524 0.66 0.999612
Target:  5'- gCCgCCGCggaGGCGCcgg---GCGcgGGCg -3'
miRNA:   3'- -GG-GGCGa--CCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 16467 0.66 0.999612
Target:  5'- gCCCGC-GGCGCAGAGcgcggACAccucucuuGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUUua---UGUuau-----CG- -5'
6487 3' -47.4 NC_001847.1 + 36624 0.66 0.999612
Target:  5'- aCCgCGCggugGGCGaCAAGcugGCuGUGGCg -3'
miRNA:   3'- -GGgGCGa---CCGC-GUUUuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 23711 0.66 0.999612
Target:  5'- --gCGCggucGGCGCAGAGGU-CGAUcaGGCg -3'
miRNA:   3'- gggGCGa---CCGCGUUUUUAuGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 33962 0.66 0.999612
Target:  5'- aCCCgagcgCGCUGGCGCcgggc-GCGcUGGCc -3'
miRNA:   3'- -GGG-----GCGACCGCGuuuuuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 50757 0.66 0.999612
Target:  5'- gCCCCGguUUGGCGCGccAAcGCGG-AGCc -3'
miRNA:   3'- -GGGGC--GACCGCGUuuUUaUGUUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.