miRNA display CGI


Results 21 - 40 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 7300 0.7 0.991215
Target:  5'- -gCCGCUGGCGCGGc---GCcugAGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 7855 0.68 0.997541
Target:  5'- aCCgCCGgUGGCGCc----UGCAGaGGCg -3'
miRNA:   3'- -GG-GGCgACCGCGuuuuuAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 7932 0.69 0.993528
Target:  5'- cCCCCGCcguuuugcagcuugcGGCGUAGcccGGUGCAAUaaaAGCa -3'
miRNA:   3'- -GGGGCGa--------------CCGCGUUu--UUAUGUUA---UCG- -5'
6487 3' -47.4 NC_001847.1 + 8015 0.76 0.864206
Target:  5'- cCCCCGCgcgGGCa-AAAAAUcCAAUGGCg -3'
miRNA:   3'- -GGGGCGa--CCGcgUUUUUAuGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 8641 0.67 0.99885
Target:  5'- gCCgCUGCggacucgGGCGCccag--ACGAUGGCg -3'
miRNA:   3'- -GG-GGCGa------CCGCGuuuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 8863 0.7 0.988449
Target:  5'- -gCUGCUGGCGCAAuuggGCcccagAGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuuuaUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 9030 0.78 0.752603
Target:  5'- cCCCUGCUagacgcgaugcGGCGCGAGGggGCAAUGGa -3'
miRNA:   3'- -GGGGCGA-----------CCGCGUUUUuaUGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 10083 0.76 0.856015
Target:  5'- gCCCCGCcGcGCGCGGGAGcACAAgcGGCg -3'
miRNA:   3'- -GGGGCGaC-CGCGUUUUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 10442 0.66 0.999694
Target:  5'- cCCCCGCgcccggcuccccUGGCcGCGuugcuggagcGAAUGCAGgccgAGCu -3'
miRNA:   3'- -GGGGCG------------ACCG-CGUu---------UUUAUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 10621 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 10938 0.7 0.985785
Target:  5'- gCCgGCUGGCGCGGcuggccuuugcgcauAuGUAC-GUGGCg -3'
miRNA:   3'- gGGgCGACCGCGUU---------------UuUAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 11334 0.66 0.999694
Target:  5'- -gCgGCUGGCGCcGGA--GCGggAGCa -3'
miRNA:   3'- ggGgCGACCGCGuUUUuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 11472 0.67 0.999063
Target:  5'- gUCUCGCUGuCGCuuucgcUAUAAUAGCa -3'
miRNA:   3'- -GGGGCGACcGCGuuuuu-AUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 11860 0.77 0.802295
Target:  5'- gCCCUGCgggcGGCGCGAGcGUAUAAaAGCc -3'
miRNA:   3'- -GGGGCGa---CCGCGUUUuUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 11909 0.66 0.999465
Target:  5'- uCCgCGCUGGCGCGGcaucgucuuCA--AGCg -3'
miRNA:   3'- -GGgGCGACCGCGUUuuuau----GUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 12922 0.69 0.994356
Target:  5'- gCCgCCGCgggGGCGCGcgugucGucGUGCGGUGGg -3'
miRNA:   3'- -GG-GGCGa--CCGCGU------UuuUAUGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 13337 0.73 0.952081
Target:  5'- aCCUGCUGGCGCuacggcacuCAGaGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuuau--GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 13792 0.68 0.997068
Target:  5'- aCCCCGCccgccGCGCAGAAAccaagacacACGcgAGCg -3'
miRNA:   3'- -GGGGCGac---CGCGUUUUUa--------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 13930 0.69 0.995173
Target:  5'- gCCCGCgacGGCGUc---AUGCGcgAGCu -3'
miRNA:   3'- gGGGCGa--CCGCGuuuuUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 14049 0.66 0.99976
Target:  5'- aCCgUCGC-GGCGCAGAGcgcaaGCAGcAGCa -3'
miRNA:   3'- -GG-GGCGaCCGCGUUUUua---UGUUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.