miRNA display CGI


Results 21 - 40 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 130805 0.67 0.999241
Target:  5'- gCCgaGCUGGCGCcc---UACA-UGGCg -3'
miRNA:   3'- -GGggCGACCGCGuuuuuAUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 130483 0.68 0.997497
Target:  5'- gCCCUGCUcgacgcGGCGCGucgggcuGAGGcGCGcgAGCg -3'
miRNA:   3'- -GGGGCGA------CCGCGU-------UUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 130180 0.73 0.946689
Target:  5'- aCCCCGCgGGCGCccggccuGAAGAgACGGgcGGCg -3'
miRNA:   3'- -GGGGCGaCCGCG-------UUUUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 130177 0.7 0.985051
Target:  5'- gCCCCaGCUgcccccccGGCGCGc----GCGAUAGCg -3'
miRNA:   3'- -GGGG-CGA--------CCGCGUuuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 129929 0.69 0.993331
Target:  5'- gCCCCGCcGGCcgccgcgGCGAGAGagccgGCGAgGGCu -3'
miRNA:   3'- -GGGGCGaCCG-------CGUUUUUa----UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 129389 0.68 0.995892
Target:  5'- uUCgCGUUGGCGCGccGGAcgGCGGU-GCg -3'
miRNA:   3'- -GGgGCGACCGCGU--UUUuaUGUUAuCG- -5'
6487 3' -47.4 NC_001847.1 + 128797 0.68 0.997541
Target:  5'- gCCCGC-GGCGCGGu--UGCcgccggGGCa -3'
miRNA:   3'- gGGGCGaCCGCGUUuuuAUGuua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 128109 0.67 0.999241
Target:  5'- gCCCaaacgacguggCGCUGGCGCuggcGGAUGCGc-GGCc -3'
miRNA:   3'- -GGG-----------GCGACCGCGuu--UUUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 127194 0.73 0.951646
Target:  5'- aCCCGCaUGGCGCGAAcuccgGCGcgGcGCg -3'
miRNA:   3'- gGGGCG-ACCGCGUUUuua--UGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 127086 1.16 0.006948
Target:  5'- cCCCCGCUGGCGCAAAAAUACAAUAGCu -3'
miRNA:   3'- -GGGGCGACCGCGUUUUUAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 126269 0.71 0.978591
Target:  5'- aCUCGCUGGCGCucuGGGgccCAAUuGCg -3'
miRNA:   3'- gGGGCGACCGCGuu-UUUau-GUUAuCG- -5'
6487 3' -47.4 NC_001847.1 + 125948 0.71 0.978591
Target:  5'- gCCCGCUGGCGCccauGAgccuaaaGCAA-AGCc -3'
miRNA:   3'- gGGGCGACCGCGuuu-UUa------UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 125606 0.69 0.994356
Target:  5'- --gCGCUGGCGCAcgcacggACGcUAGCg -3'
miRNA:   3'- gggGCGACCGCGUuuuua--UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 125480 0.69 0.992387
Target:  5'- gCUCGCggcgGGCGCGAGGAcgcccggcUGCucgAGCg -3'
miRNA:   3'- gGGGCGa---CCGCGUUUUU--------AUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 124994 0.69 0.995173
Target:  5'- gCCUGCUcGG-GCGAGAGcUGCAGcAGCg -3'
miRNA:   3'- gGGGCGA-CCgCGUUUUU-AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 124909 0.69 0.994356
Target:  5'- gCCCgGCaGGCGCGccggggGCGAcAGCg -3'
miRNA:   3'- -GGGgCGaCCGCGUuuuua-UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 124428 0.66 0.999489
Target:  5'- aCUCGCUGGCgGCGcuuggccgGCGcgGGCc -3'
miRNA:   3'- gGGGCGACCG-CGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 124136 0.66 0.999694
Target:  5'- gCCCUGCgccUGGCucuGCuGGGAGUGCAGgcGCc -3'
miRNA:   3'- -GGGGCG---ACCG---CG-UUUUUAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 123703 0.77 0.830081
Target:  5'- -gCCGCUGGCGCGGGGucgcACGGcAGCa -3'
miRNA:   3'- ggGGCGACCGCGUUUUua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 123595 0.7 0.985051
Target:  5'- aCCCGCUgGGCGCAcuccAGAcGCGAacgcAGCa -3'
miRNA:   3'- gGGGCGA-CCGCGUu---UUUaUGUUa---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.