miRNA display CGI


Results 1 - 20 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 134794 0.71 0.978591
Target:  5'- gCCCCGg-GGCGCGAAgcccggGAgggACGcgGGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUU------UUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134650 0.66 0.999389
Target:  5'- gCCgGCagcaGGCGCGGAG--GCGcgGGCa -3'
miRNA:   3'- gGGgCGa---CCGCGUUUUuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134606 0.71 0.976036
Target:  5'- cCCCCGgaGaGCGCAucuAGUAgAAcAGCg -3'
miRNA:   3'- -GGGGCgaC-CGCGUuu-UUAUgUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134521 0.68 0.99652
Target:  5'- -gCCGC-GGCGCAugugguGGUACAcggGGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuu----UUAUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 134512 0.66 0.999389
Target:  5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3'
miRNA:   3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134178 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134021 0.74 0.908109
Target:  5'- gCCgCCGCUGGUGCuGGAGgccGCGGcGGCg -3'
miRNA:   3'- -GG-GGCGACCGCGuUUUUa--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 133571 0.68 0.99795
Target:  5'- gCgCGCUGGCGCGcgccGUGC--UGGCc -3'
miRNA:   3'- gGgGCGACCGCGUuuu-UAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 133390 0.67 0.998598
Target:  5'- uUCCGC-GGCGCGguGGAGUACcucuGCg -3'
miRNA:   3'- gGGGCGaCCGCGU--UUUUAUGuuauCG- -5'
6487 3' -47.4 NC_001847.1 + 133067 0.7 0.988903
Target:  5'- gCCCCGCggGGCGCucgccgccaccgcUGCGGcGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGuuuuu--------AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 132714 0.71 0.973264
Target:  5'- -gCgGCUGGCGCGAAGcuugGCGA-AGCg -3'
miRNA:   3'- ggGgCGACCGCGUUUUua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 132321 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 132245 0.68 0.99652
Target:  5'- gCCCCGCUcGCGCGGuacucgACGcgcGGCg -3'
miRNA:   3'- -GGGGCGAcCGCGUUuuua--UGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 131923 0.73 0.951646
Target:  5'- -gCCGCggcGGCGCGGAGGcacgugcgccgGCGAUGGCg -3'
miRNA:   3'- ggGGCGa--CCGCGUUUUUa----------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 131578 0.69 0.992387
Target:  5'- aCCUgcaGCUGGCGCGccugcUGCAGcGGCg -3'
miRNA:   3'- -GGGg--CGACCGCGUuuuu-AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131220 0.67 0.999063
Target:  5'- gCCCGCUGccaGCGCu---GUGCGu--GCg -3'
miRNA:   3'- gGGGCGAC---CGCGuuuuUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 131211 0.69 0.99343
Target:  5'- cCCCCGCcgcGGCGCca----GCGcgGGCg -3'
miRNA:   3'- -GGGGCGa--CCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131163 0.66 0.999389
Target:  5'- gCCgCGCUGGCGCugcuc-ACGGcccaccucgcgcUGGCg -3'
miRNA:   3'- -GGgGCGACCGCGuuuuuaUGUU------------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 130900 0.7 0.988449
Target:  5'- -gCUGCUGGCGCAGcucGUGCc--GGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuu-UAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 130836 0.73 0.937361
Target:  5'- aCCCGCaggcGGCGCGcGAGUACcaaGGCg -3'
miRNA:   3'- gGGGCGa---CCGCGUuUUUAUGuuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.