miRNA display CGI


Results 41 - 60 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 80008 0.74 0.932057
Target:  5'- gCCCCGCgcccGCGCG--GAUGCGA-AGCa -3'
miRNA:   3'- -GGGGCGac--CGCGUuuUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 64463 0.74 0.932057
Target:  5'- gCCCGCggcGGCGCGGGGGgccgaaGCAGggAGCa -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUa-----UGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 130836 0.73 0.937361
Target:  5'- aCCCGCaggcGGCGCGcGAGUACcaaGGCg -3'
miRNA:   3'- gGGGCGa---CCGCGUuUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 20760 0.73 0.937361
Target:  5'- gCCUCGCcuucgucGGCGCGcAGAUGCGAggggGGCu -3'
miRNA:   3'- -GGGGCGa------CCGCGUuUUUAUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 121913 0.73 0.942392
Target:  5'- gCCCCGCUGGCcaucGCGGAGcucGCcg-AGCg -3'
miRNA:   3'- -GGGGCGACCG----CGUUUUua-UGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 130180 0.73 0.946689
Target:  5'- aCCCCGCgGGCGCccggccuGAAGAgACGGgcGGCg -3'
miRNA:   3'- -GGGGCGaCCGCG-------UUUUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 60461 0.73 0.951646
Target:  5'- cCCCCGUcgGGCGCGucc--GCcAUGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUuuuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 131923 0.73 0.951646
Target:  5'- -gCCGCggcGGCGCGGAGGcacgugcgccgGCGAUGGCg -3'
miRNA:   3'- ggGGCGa--CCGCGUUUUUa----------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 3057 0.73 0.951646
Target:  5'- -gCCGCaGGCGCAGGuugugcucguAGUGCAGcAGCg -3'
miRNA:   3'- ggGGCGaCCGCGUUU----------UUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 127194 0.73 0.951646
Target:  5'- aCCCGCaUGGCGCGAAcuccgGCGcgGcGCg -3'
miRNA:   3'- gGGGCG-ACCGCGUUUuua--UGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 24381 0.73 0.951646
Target:  5'- aCCCGCaUGGCGCGAAcuccgGCGcgGcGCg -3'
miRNA:   3'- gGGGCG-ACCGCGUUUuua--UGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 13337 0.73 0.952081
Target:  5'- aCCUGCUGGCGCuacggcacuCAGaGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuuau--GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 19147 0.72 0.953794
Target:  5'- cCCCCGgaGGCGCuuuuuuuuuugucccCGAUGGCa -3'
miRNA:   3'- -GGGGCgaCCGCGuuuuuau--------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 99597 0.72 0.955877
Target:  5'- gCCaaGCuUGGCGCGGGGcUGCAGUccGGCg -3'
miRNA:   3'- -GGggCG-ACCGCGUUUUuAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 85791 0.72 0.959074
Target:  5'- aCCaCCGCgacguuUGGCGCGAAugccgucuccACAGUAGCc -3'
miRNA:   3'- -GG-GGCG------ACCGCGUUUuua-------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 53816 0.72 0.959848
Target:  5'- gCCCC-CUGGCGCGccGGaGCGggGGCg -3'
miRNA:   3'- -GGGGcGACCGCGUuuUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 37111 0.72 0.959848
Target:  5'- gCCCGCUGGUGUuc--AUGCucuggGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 34812 0.72 0.959848
Target:  5'- -gCCGCUGGCGCGGcAGgcCGAccgGGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuUUauGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 95641 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95695 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.