miRNA display CGI


Results 61 - 80 of 410 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 72765 0.74 0.914506
Target:  5'- gUCCGCUGGCGCu--GAcGCAccAGCu -3'
miRNA:   3'- gGGGCGACCGCGuuuUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 64463 0.74 0.932057
Target:  5'- gCCCGCggcGGCGCGGGGGgccgaaGCAGggAGCa -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUa-----UGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 85855 0.72 0.967037
Target:  5'- gCgUCGCUGGCGCGGAuguuAUACGGc-GCg -3'
miRNA:   3'- -GgGGCGACCGCGUUUu---UAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 113434 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 45587 0.72 0.967037
Target:  5'- cCCUCGCcgGGCGCGAcgaucacguaggGGAUGCGGUccuugacguuggGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUU------------UUUAUGUUA------------UCG- -5'
6487 3' -47.4 NC_001847.1 + 37409 0.72 0.970267
Target:  5'- gCgUGCUGGCGCGcauGUGCAuuccgGGCg -3'
miRNA:   3'- gGgGCGACCGCGUuuuUAUGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 43230 0.72 0.970267
Target:  5'- gCCCGgUGGCGguGGGGgcGCGcgGGCg -3'
miRNA:   3'- gGGGCgACCGCguUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34468 0.72 0.970267
Target:  5'- -gCCGCcGGCgGCGAGGAUGCGGacGGCg -3'
miRNA:   3'- ggGGCGaCCG-CGUUUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 66544 0.71 0.972683
Target:  5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3'
miRNA:   3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 76595 0.71 0.973264
Target:  5'- gCCgCCGCUGGCggcgGCGAAGAccGCGGcGGCc -3'
miRNA:   3'- -GG-GGCGACCG----CGUUUUUa-UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 36686 0.72 0.967037
Target:  5'- cCCCCGCUGGaCG-AGAGcgGC-GUGGUg -3'
miRNA:   3'- -GGGGCGACC-GCgUUUUuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 45641 0.72 0.963566
Target:  5'- gCCUCGCUGcGCaGCAGGAGUuu-GUAGUa -3'
miRNA:   3'- -GGGGCGAC-CG-CGUUUUUAuguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 20760 0.73 0.937361
Target:  5'- gCCUCGCcuucgucGGCGCGcAGAUGCGAggggGGCu -3'
miRNA:   3'- -GGGGCGa------CCGCGUuUUUAUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 121913 0.73 0.942392
Target:  5'- gCCCCGCUGGCcaucGCGGAGcucGCcg-AGCg -3'
miRNA:   3'- -GGGGCGACCG----CGUUUUua-UGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 3057 0.73 0.951646
Target:  5'- -gCCGCaGGCGCAGGuugugcucguAGUGCAGcAGCg -3'
miRNA:   3'- ggGGCGaCCGCGUUU----------UUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 60461 0.73 0.951646
Target:  5'- cCCCCGUcgGGCGCGucc--GCcAUGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUuuuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 127194 0.73 0.951646
Target:  5'- aCCCGCaUGGCGCGAAcuccgGCGcgGcGCg -3'
miRNA:   3'- gGGGCG-ACCGCGUUUuua--UGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 13337 0.73 0.952081
Target:  5'- aCCUGCUGGCGCuacggcacuCAGaGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuuau--GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 99597 0.72 0.955877
Target:  5'- gCCaaGCuUGGCGCGGGGcUGCAGUccGGCg -3'
miRNA:   3'- -GGggCG-ACCGCGUUUUuAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 34812 0.72 0.959848
Target:  5'- -gCCGCUGGCGCGGcAGgcCGAccgGGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuUUauGUUa--UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.