miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 108533 0.69 0.951377
Target:  5'- gCGCCug-GGAgggcuuaccUGCCCGCGgGg -3'
miRNA:   3'- gGCGGuaaCCUaaaaa----ACGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 5720 0.69 0.951377
Target:  5'- gCGCCug-GGAgggcuuaccUGCCCGCGgGg -3'
miRNA:   3'- gGCGGuaaCCUaaaaa----ACGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 39295 0.69 0.953057
Target:  5'- aCCGCCuagcUUGGA------GCCCGUGCc -3'
miRNA:   3'- -GGCGGu---AACCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 94248 0.69 0.953057
Target:  5'- gCGCCG-UGGAgcg---GCUCGCGCc -3'
miRNA:   3'- gGCGGUaACCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 43203 0.69 0.953882
Target:  5'- gCGCCucgUGGAUUgcucggcgccgUUGCCCgguggcggugggggcGCGCGg -3'
miRNA:   3'- gGCGGua-ACCUAAaa---------AACGGG---------------CGCGC- -5'
6487 5' -50.9 NC_001847.1 + 27410 0.69 0.954698
Target:  5'- cCCGCCGgcccaaGGGUUguagccccggggUGCCCGCccGCGa -3'
miRNA:   3'- -GGCGGUaa----CCUAAaaa---------ACGGGCG--CGC- -5'
6487 5' -50.9 NC_001847.1 + 72957 0.69 0.955902
Target:  5'- cCCGUCuucgcgcggAUUGGGgacgcggacgcGCCCGCGCGg -3'
miRNA:   3'- -GGCGG---------UAACCUaaaaaa-----CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 129778 0.69 0.956299
Target:  5'- aCCGCCGgagccUGGGcccggccGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUa----ACCUaaaaaa-CG-GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 64672 0.69 0.957085
Target:  5'- aCGCCAUccaccGGGc-----GCCCGCGCGu -3'
miRNA:   3'- gGCGGUAa----CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 67591 0.69 0.957085
Target:  5'- gCGCCGaucugGGAgaacc-GCCCGCGCc -3'
miRNA:   3'- gGCGGUaa---CCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 65814 0.69 0.957085
Target:  5'- gCCGCCAgcagcgcccgagGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaaccuaaaaaa-CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 92391 0.69 0.958245
Target:  5'- -gGCCGUccUGGAUcUgcuguccgccccgccGCCCGCGCGg -3'
miRNA:   3'- ggCGGUA--ACCUAaAaaa------------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 73658 0.68 0.960132
Target:  5'- cCCGgCGUaccUGGAcgcccugGCCCGCGCc -3'
miRNA:   3'- -GGCgGUA---ACCUaaaaaa-CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 66659 0.68 0.96087
Target:  5'- aCUGCC--UGGcgcgcUUgcGCCCGCGCGg -3'
miRNA:   3'- -GGCGGuaACCuaa--AAaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 13822 0.68 0.96087
Target:  5'- aCGCgAgcGaGAUcgUUUGCCgCGCGCGg -3'
miRNA:   3'- gGCGgUaaC-CUAaaAAACGG-GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 39056 0.68 0.96087
Target:  5'- cCCGCUcgUGGG------GCUCGCGCa -3'
miRNA:   3'- -GGCGGuaACCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 82143 0.68 0.963027
Target:  5'- gCCGCUGUcGGcuccgccaUGCCUGCGCGu -3'
miRNA:   3'- -GGCGGUAaCCuaaaaa--ACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 58730 0.68 0.964418
Target:  5'- cCCGCCGcgGGGUgcc---CCCGcCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAaaaaacGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 49992 0.68 0.964418
Target:  5'- uCCGCgAgaGGA------GCCCGCGCGc -3'
miRNA:   3'- -GGCGgUaaCCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 53680 0.68 0.964418
Target:  5'- gCCGCCAgccgcaaGAUg---UGCgCGCGCGa -3'
miRNA:   3'- -GGCGGUaac----CUAaaaaACGgGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.