miRNA display CGI


Results 81 - 100 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 29013 0.67 0.977858
Target:  5'- gCGCCGgcGGcagcggcGCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 131826 0.67 0.977858
Target:  5'- gCGCCGgcGGcagcggcGCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 100 0.67 0.976359
Target:  5'- uCCGCCccUGGGUccggcGCCCcGCGCc -3'
miRNA:   3'- -GGCGGuaACCUAaaaaaCGGG-CGCGc -5'
6487 5' -50.9 NC_001847.1 + 33657 0.67 0.976359
Target:  5'- gCGCgCGcgUGGccgcg--GCCCGCGCGg -3'
miRNA:   3'- gGCG-GUa-ACCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 26957 0.67 0.976359
Target:  5'- gUCGCCggaGUUGGAaaugaggUGCgCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa--ACGgGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 15400 0.67 0.976359
Target:  5'- uCCGCCAgcUGGGcg----GCCCuggaGCGCGg -3'
miRNA:   3'- -GGCGGUa-ACCUaaaaaaCGGG----CGCGC- -5'
6487 5' -50.9 NC_001847.1 + 102913 0.67 0.976359
Target:  5'- uCCGCCccUGGGUccggcGCCCcGCGCc -3'
miRNA:   3'- -GGCGGuaACCUAaaaaaCGGG-CGCGc -5'
6487 5' -50.9 NC_001847.1 + 28622 0.67 0.976359
Target:  5'- gCCGCCcgaGGcgcuagUGCCCGCGgGu -3'
miRNA:   3'- -GGCGGuaaCCuaaaaaACGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 60476 0.67 0.976102
Target:  5'- uCCGCCA-UGGcgccgccgcuuugUGCgCGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaaaaa-------ACGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 92846 0.67 0.975843
Target:  5'- gCCGCCGUagaaauuUGGuucgaggacgugGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUA-------ACCuaaaaaa-----CG-GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 103088 0.67 0.975319
Target:  5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3'
miRNA:   3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 275 0.67 0.975319
Target:  5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3'
miRNA:   3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 21722 0.67 0.975054
Target:  5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 124535 0.67 0.975054
Target:  5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 87250 0.68 0.974787
Target:  5'- aCCGCCGcgGGAUUc--UGCCgcuuucucgcggacgUGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaACGG---------------GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 130521 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 103961 0.68 0.973697
Target:  5'- aCCGUCGaUGGcgUcggcGCCCaGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaAaaaaCGGG-CGCGC- -5'
6487 5' -50.9 NC_001847.1 + 59564 0.68 0.973697
Target:  5'- -gGCC--UGGAgcacuuUUUUUUGCCgGCGCu -3'
miRNA:   3'- ggCGGuaACCU------AAAAAACGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 61393 0.68 0.973697
Target:  5'- gCCGCCGcccggcgcUUGGAac---UGCCCuCGCGg -3'
miRNA:   3'- -GGCGGU--------AACCUaaaaaACGGGcGCGC- -5'
6487 5' -50.9 NC_001847.1 + 27708 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.