miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 17689 0.69 0.944257
Target:  5'- aCCGCCAgUGGcgUUgucgGCCaCGcCGCa -3'
miRNA:   3'- -GGCGGUaACCuaAAaaa-CGG-GC-GCGc -5'
6487 5' -50.9 NC_001847.1 + 18009 0.66 0.992551
Target:  5'- gCGCgAagugUGGAUgccaaacuugccggUGCCCGCGCc -3'
miRNA:   3'- gGCGgUa---ACCUAaaaa----------ACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 19654 0.68 0.971709
Target:  5'- gCGCCcuuccaGGGgcaagcccagacgUGCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa---CCUaaaaa--------ACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 20750 0.66 0.98612
Target:  5'- aCGCCGacgUGGAUccgcaaucccUGCCCGUGgGa -3'
miRNA:   3'- gGCGGUa--ACCUAaaaa------ACGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 21722 0.67 0.975054
Target:  5'- gCGCCAgcagGGcgcgggccggcgccgGCCCGCGCGc -3'
miRNA:   3'- gGCGGUaa--CCuaaaaaa--------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 23080 0.66 0.985947
Target:  5'- gUCGCCGagGGcgcccucuacguaGCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaa------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 23773 0.67 0.981082
Target:  5'- -gGCCAgcGGA-----UGCCCGgGCGc -3'
miRNA:   3'- ggCGGUaaCCUaaaaaACGGGCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 24309 1.12 0.005131
Target:  5'- uCCGCCAUUGGAUUUUUUGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAACCUAAAAAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 24511 0.71 0.898835
Target:  5'- aCGCCGUgGGcgUcgggGCUCGCGCGc -3'
miRNA:   3'- gGCGGUAaCCuaAaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 26957 0.67 0.976359
Target:  5'- gUCGCCggaGUUGGAaaugaggUGCgCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa--ACGgGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 27410 0.69 0.954698
Target:  5'- cCCGCCGgcccaaGGGUUguagccccggggUGCCCGCccGCGa -3'
miRNA:   3'- -GGCGGUaa----CCUAAaaa---------ACGGGCG--CGC- -5'
6487 5' -50.9 NC_001847.1 + 27708 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 28173 0.77 0.596876
Target:  5'- gCGCCGUUGGGUUaccugGCggCCGCGCGc -3'
miRNA:   3'- gGCGGUAACCUAAaaaa-CG--GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 28472 0.73 0.811192
Target:  5'- gCCGCCGcUGGAgg----GCCCGCuGCu -3'
miRNA:   3'- -GGCGGUaACCUaaaaaaCGGGCG-CGc -5'
6487 5' -50.9 NC_001847.1 + 28622 0.67 0.976359
Target:  5'- gCCGCCcgaGGcgcuagUGCCCGCGgGu -3'
miRNA:   3'- -GGCGGuaaCCuaaaaaACGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 28853 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 29013 0.67 0.977858
Target:  5'- gCGCCGgcGGcagcggcGCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 29163 0.66 0.993261
Target:  5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3'
miRNA:   3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 29194 0.66 0.989792
Target:  5'- gCUGCCGUugcUGGGgc---UGCCCGacgGCGg -3'
miRNA:   3'- -GGCGGUA---ACCUaaaaaACGGGCg--CGC- -5'
6487 5' -50.9 NC_001847.1 + 29509 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.