miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 122914 0.71 0.87763
Target:  5'- cUCGCCGUUcGGGUg---UGCgCGCGCc -3'
miRNA:   3'- -GGCGGUAA-CCUAaaaaACGgGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 11979 0.71 0.87763
Target:  5'- gUGCCGUUGGcgggg--GCUCGCGCa -3'
miRNA:   3'- gGCGGUAACCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 62411 0.71 0.880584
Target:  5'- cCCGCCGgcgcug---UUGCCCGCGUGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 91610 0.71 0.889916
Target:  5'- gCGCCGUguUGGccgcgaggaaGCCCGCGCGc -3'
miRNA:   3'- gGCGGUA--ACCuaaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 63192 0.71 0.898835
Target:  5'- gCGCCA-UGGccga---GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 24511 0.71 0.898835
Target:  5'- aCGCCGUgGGcgUcgggGCUCGCGCGc -3'
miRNA:   3'- gGCGGUAaCCuaAaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 61939 0.71 0.902809
Target:  5'- gCGUCAgcGGcggcgcgGCCCGCGCGg -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 7962 0.71 0.905408
Target:  5'- gCGCCAUgcGGGUUUUUaggGCCUGCuCGg -3'
miRNA:   3'- gGCGGUAa-CCUAAAAAa--CGGGCGcGC- -5'
6487 5' -50.9 NC_001847.1 + 125071 0.7 0.910485
Target:  5'- gCGCgCGgcGGGgcgcuggGCCCGCGCGg -3'
miRNA:   3'- gGCG-GUaaCCUaaaaaa-CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 64138 0.7 0.911729
Target:  5'- gCCGCCGUacUGGAcaugcgGCCCGCcauGCa -3'
miRNA:   3'- -GGCGGUA--ACCUaaaaaaCGGGCG---CGc -5'
6487 5' -50.9 NC_001847.1 + 119581 0.7 0.911729
Target:  5'- gCCGCCGaUGGGggUUcc-CCCGCGCc -3'
miRNA:   3'- -GGCGGUaACCUaaAAaacGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 52407 0.7 0.916601
Target:  5'- gCGCCGUgcuccaGGcgcugg-GCCCGCGCGu -3'
miRNA:   3'- gGCGGUAa-----CCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 127023 0.7 0.922461
Target:  5'- cCCGCCccUGGGgccccgcGCCUGCGCu -3'
miRNA:   3'- -GGCGGuaACCUaaaaaa-CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 30040 0.7 0.923602
Target:  5'- gCCGCgGccgUGGGcgacgUUGCCgGCGCGg -3'
miRNA:   3'- -GGCGgUa--ACCUaaaa-AACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 120086 0.7 0.926963
Target:  5'- gCCGCgCGgggcgGGAgauaaagcGCCCGCGCGu -3'
miRNA:   3'- -GGCG-GUaa---CCUaaaaaa--CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 121447 0.7 0.928062
Target:  5'- aCCGCCGccGGGUUguuaaauggGUCuCGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaa-----CGG-GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 66150 0.7 0.928062
Target:  5'- gCGCaCGUgcUGGAcgUgcucucggccgUGCCCGCGCGg -3'
miRNA:   3'- gGCG-GUA--ACCUaaAaa---------ACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 87842 0.7 0.929152
Target:  5'- aCGCCGgcgGGcgUgaugGCCCGCGgGc -3'
miRNA:   3'- gGCGGUaa-CCuaAaaaaCGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 30715 0.7 0.929152
Target:  5'- gCGCUccUGGAc-----GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaACCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 73185 0.7 0.929152
Target:  5'- gCGgCGgcGGAgucg--GCCCGCGCGg -3'
miRNA:   3'- gGCgGUaaCCUaaaaaaCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.