miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 127122 1.12 0.005131
Target:  5'- uCCGCCAUUGGAUUUUUUGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAACCUAAAAAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 24309 1.12 0.005131
Target:  5'- uCCGCCAUUGGAUUUUUUGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAACCUAAAAAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 132322 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 29509 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 57563 0.77 0.57577
Target:  5'- gCCGCCGUgcGAgcucg-GCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAacCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 28173 0.77 0.596876
Target:  5'- gCGCCGUUGGGUUaccugGCggCCGCGCGc -3'
miRNA:   3'- gGCGGUAACCUAAaaaa-CG--GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 113611 0.76 0.669065
Target:  5'- gUGCCAgcUUGGGcgcguugGCCCGCGCGg -3'
miRNA:   3'- gGCGGU--AACCUaaaaaa-CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 82970 0.75 0.706859
Target:  5'- cCCGCC--UGGAagacgcgauugUUGCCCGCGCu -3'
miRNA:   3'- -GGCGGuaACCUaaaa-------AACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 478 0.75 0.7234
Target:  5'- gCGCCGUcaUGGG-----UGCCCGCGCc -3'
miRNA:   3'- gGCGGUA--ACCUaaaaaACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 79131 0.74 0.773501
Target:  5'- gCCGCCA--GGAcg---UGCCCGuCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 55736 0.73 0.799221
Target:  5'- gCGCCAcggUGGuccggcucgcGCCCGCGCGg -3'
miRNA:   3'- gGCGGUa--ACCuaaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 131285 0.73 0.811192
Target:  5'- gCCGCCGcUGGAgg----GCCCGCuGCu -3'
miRNA:   3'- -GGCGGUaACCUaaaaaaCGGGCG-CGc -5'
6487 5' -50.9 NC_001847.1 + 40259 0.73 0.811192
Target:  5'- gCGCCGaagcgcGGAUUUgcgagcUGCCCGCGCc -3'
miRNA:   3'- gGCGGUaa----CCUAAAaa----ACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 28472 0.73 0.811192
Target:  5'- gCCGCCGcUGGAgg----GCCCGCuGCu -3'
miRNA:   3'- -GGCGGUaACCUaaaaaaCGGGCG-CGc -5'
6487 5' -50.9 NC_001847.1 + 89820 0.72 0.835945
Target:  5'- aCCGCCG-UGGAgcgcgcgGCCaaCGCGCGa -3'
miRNA:   3'- -GGCGGUaACCUaaaaaa-CGG--GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 32129 0.72 0.849397
Target:  5'- gCCGCCGgcgcUGGGcgccgccgcGCCCGCGCa -3'
miRNA:   3'- -GGCGGUa---ACCUaaaaaa---CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 74259 0.72 0.862305
Target:  5'- gCCGCCGcugcUGGG------GCCCGCGCGc -3'
miRNA:   3'- -GGCGGUa---ACCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 57874 0.72 0.864662
Target:  5'- gCCGCCGUcgcacgaGGGUgucgcccgccagcGCCCGCGCGa -3'
miRNA:   3'- -GGCGGUAa------CCUAaaaaa--------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 103736 0.72 0.868545
Target:  5'- cCCGCCGgcgccgGGAagcccgaGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaa-CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 923 0.72 0.868545
Target:  5'- cCCGCCGgcgccgGGAagcccgaGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaa-CGGGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.