miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 30040 0.7 0.923602
Target:  5'- gCCGCgGccgUGGGcgacgUUGCCgGCGCGg -3'
miRNA:   3'- -GGCGgUa--ACCUaaaa-AACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 122914 0.71 0.87763
Target:  5'- cUCGCCGUUcGGGUg---UGCgCGCGCc -3'
miRNA:   3'- -GGCGGUAA-CCUAaaaaACGgGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 62411 0.71 0.880584
Target:  5'- cCCGCCGgcgcug---UUGCCCGCGUGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 63192 0.71 0.898835
Target:  5'- gCGCCA-UGGccga---GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 24511 0.71 0.898835
Target:  5'- aCGCCGUgGGcgUcgggGCUCGCGCGc -3'
miRNA:   3'- gGCGGUAaCCuaAaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 61939 0.71 0.902809
Target:  5'- gCGUCAgcGGcggcgcgGCCCGCGCGg -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 119581 0.7 0.911729
Target:  5'- gCCGCCGaUGGGggUUcc-CCCGCGCc -3'
miRNA:   3'- -GGCGGUaACCUaaAAaacGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 64138 0.7 0.911729
Target:  5'- gCCGCCGUacUGGAcaugcgGCCCGCcauGCa -3'
miRNA:   3'- -GGCGGUA--ACCUaaaaaaCGGGCG---CGc -5'
6487 5' -50.9 NC_001847.1 + 52407 0.7 0.916601
Target:  5'- gCGCCGUgcuccaGGcgcugg-GCCCGCGCGu -3'
miRNA:   3'- gGCGGUAa-----CCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 103736 0.72 0.868545
Target:  5'- cCCGCCGgcgccgGGAagcccgaGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaa-CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 74259 0.72 0.862305
Target:  5'- gCCGCCGcugcUGGG------GCCCGCGCGc -3'
miRNA:   3'- -GGCGGUa---ACCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 32129 0.72 0.849397
Target:  5'- gCCGCCGgcgcUGGGcgccgccgcGCCCGCGCa -3'
miRNA:   3'- -GGCGGUa---ACCUaaaaaa---CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 132322 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 28173 0.77 0.596876
Target:  5'- gCGCCGUUGGGUUaccugGCggCCGCGCGc -3'
miRNA:   3'- gGCGGUAACCUAAaaaa-CG--GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 478 0.75 0.7234
Target:  5'- gCGCCGUcaUGGG-----UGCCCGCGCc -3'
miRNA:   3'- gGCGGUA--ACCUaaaaaACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 79131 0.74 0.773501
Target:  5'- gCCGCCA--GGAcg---UGCCCGuCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 55736 0.73 0.799221
Target:  5'- gCGCCAcggUGGuccggcucgcGCCCGCGCGg -3'
miRNA:   3'- gGCGGUa--ACCuaaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 40259 0.73 0.811192
Target:  5'- gCGCCGaagcgcGGAUUUgcgagcUGCCCGCGCc -3'
miRNA:   3'- gGCGGUaa----CCUAAAaa----ACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 131285 0.73 0.811192
Target:  5'- gCCGCCGcUGGAgg----GCCCGCuGCu -3'
miRNA:   3'- -GGCGGUaACCUaaaaaaCGGGCG-CGc -5'
6487 5' -50.9 NC_001847.1 + 89820 0.72 0.835945
Target:  5'- aCCGCCG-UGGAgcgcgcgGCCaaCGCGCGa -3'
miRNA:   3'- -GGCGGUaACCUaaaaaa-CGG--GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.