miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 75263 0.66 0.993261
Target:  5'- cUCGCCAacgcGGAg-----GCCgCGCGCGc -3'
miRNA:   3'- -GGCGGUaa--CCUaaaaaaCGG-GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 58064 0.66 0.991076
Target:  5'- gCCGCCgAUUGGcgc----GCgCGCGCGc -3'
miRNA:   3'- -GGCGG-UAACCuaaaaaaCGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 132130 0.66 0.989792
Target:  5'- aCCGCCccuAUUGGGcggcgcUGCugCCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa-ACG--GGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 24309 1.12 0.005131
Target:  5'- uCCGCCAUUGGAUUUUUUGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAACCUAAAAAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 119826 0.66 0.993261
Target:  5'- gCCGCgauCAUguacGGGUcgcgcacGCCCGCGCGc -3'
miRNA:   3'- -GGCG---GUAa---CCUAaaaaa--CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 104828 0.66 0.993261
Target:  5'- gCCGCCGggGGGgcgggcGUCCGCaGCu -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCG-CGc -5'
6487 5' -50.9 NC_001847.1 + 54304 0.66 0.992964
Target:  5'- gCCGCCGcccGGAUc---UGCCCccccaagucgcggcGCGCGg -3'
miRNA:   3'- -GGCGGUaa-CCUAaaaaACGGG--------------CGCGC- -5'
6487 5' -50.9 NC_001847.1 + 65453 0.66 0.992656
Target:  5'- cCCGCCcgUGuaggcgg-GCgCGCGCGg -3'
miRNA:   3'- -GGCGGuaACcuaaaaaaCGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 10728 0.66 0.992229
Target:  5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3'
miRNA:   3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5'
6487 5' -50.9 NC_001847.1 + 2087 0.66 0.991076
Target:  5'- gCGCCccgcGGG------GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa-CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 524 0.66 0.992229
Target:  5'- uCCGCgGagGGcaag--UGCCCGaCGCGg -3'
miRNA:   3'- -GGCGgUaaCCuaaaaaACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 91018 0.66 0.992229
Target:  5'- aCGCCGUgccggcGGAgcagcUGCCCG-GCGu -3'
miRNA:   3'- gGCGGUAa-----CCUaaaaaACGGGCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 61122 0.66 0.993261
Target:  5'- uCCGCCAgcGGcacgc--GCCgGCGCa -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaaCGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 91562 0.66 0.991552
Target:  5'- gCGCCAcgcUGGGgcgcgcgucGCCCGCgGCGa -3'
miRNA:   3'- gGCGGUa--ACCUaaaaaa---CGGGCG-CGC- -5'
6487 5' -50.9 NC_001847.1 + 32029 0.66 0.993261
Target:  5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3'
miRNA:   3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 18009 0.66 0.992551
Target:  5'- gCGCgAagugUGGAUgccaaacuugccggUGCCCGCGCc -3'
miRNA:   3'- gGCGgUa---ACCUAaaaa----------ACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 40956 0.66 0.991076
Target:  5'- gCGCCuc--GAac---UGCCCGCGCGa -3'
miRNA:   3'- gGCGGuaacCUaaaaaACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 74635 0.66 0.990578
Target:  5'- gCgGCCAUaaaaaGGcccgccgGCCCGCGCGc -3'
miRNA:   3'- -GgCGGUAa----CCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 29163 0.66 0.993261
Target:  5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3'
miRNA:   3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 101107 0.66 0.992964
Target:  5'- gCGCCGcgGGGcccaucgccugGCCCaGCGCGg -3'
miRNA:   3'- gGCGGUaaCCUaaaaaa-----CGGG-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.