miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 118813 0.66 0.986793
Target:  5'- cUCGCCGUUGcGGUgagcUUGCCuacaccCGCGCc -3'
miRNA:   3'- -GGCGGUAAC-CUAaaa-AACGG------GCGCGc -5'
6487 5' -50.9 NC_001847.1 + 132374 0.66 0.988367
Target:  5'- gCCGCCGgcGGGggc---GCCgGCGCc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 74615 0.66 0.991076
Target:  5'- aCGCCAUcgugcagcUGGGcagc--GCCuCGCGCGa -3'
miRNA:   3'- gGCGGUA--------ACCUaaaaaaCGG-GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 8626 0.66 0.992229
Target:  5'- cCCGCCGggGGAgc----GgCCGCuGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCgGGCG-CGC- -5'
6487 5' -50.9 NC_001847.1 + 34096 0.66 0.989792
Target:  5'- gCCGCCGUg---------GCUCGCGCGg -3'
miRNA:   3'- -GGCGGUAaccuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 135122 0.66 0.988065
Target:  5'- aCCcCCccgGGGUcgcaggggGCCCGCGCGg -3'
miRNA:   3'- -GGcGGuaaCCUAaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 36606 0.66 0.986793
Target:  5'- uCUGCUAccGGGUg---UGCuaCCGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAaaaaACG--GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 118222 0.66 0.990705
Target:  5'- aCGCaucgcUGGAgugcaacucccGCCCGCGCGa -3'
miRNA:   3'- gGCGgua--ACCUaaaaaa-----CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 109803 0.66 0.989792
Target:  5'- uUGCCGgcgUGGGUagUUUGuauaugcacaCCCGCGCc -3'
miRNA:   3'- gGCGGUa--ACCUAaaAAAC----------GGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 23080 0.66 0.985947
Target:  5'- gUCGCCGagGGcgcccucuacguaGCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaa------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 8041 0.66 0.990451
Target:  5'- -aGCCcggUGGAcccaaagccgcgcgGCCCGCGCGc -3'
miRNA:   3'- ggCGGua-ACCUaaaaaa--------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 104900 0.66 0.991076
Target:  5'- gCGCCccgcGGG------GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa-CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 103337 0.66 0.992229
Target:  5'- uCCGCgGagGGcaag--UGCCCGaCGCGg -3'
miRNA:   3'- -GGCGgUaaCCuaaaaaACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 133457 0.66 0.987441
Target:  5'- aCGCCG-UGGAccccgagaacUGgCCGCGCGa -3'
miRNA:   3'- gGCGGUaACCUaaaaa-----ACgGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 29194 0.66 0.989792
Target:  5'- gCUGCCGUugcUGGGgc---UGCCCGacgGCGg -3'
miRNA:   3'- -GGCGGUA---ACCUaaaaaACGGGCg--CGC- -5'
6487 5' -50.9 NC_001847.1 + 32016 0.66 0.992229
Target:  5'- gCGCCGgcGGcccgc--GCUCGCGCGg -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 36979 0.66 0.991076
Target:  5'- gCGCCGgc-GAgcgg--GCCCGCGCc -3'
miRNA:   3'- gGCGGUaacCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 93782 0.66 0.986793
Target:  5'- gCCGCCGcUUGGcug----GuUCCGCGCGg -3'
miRNA:   3'- -GGCGGU-AACCuaaaaaaC-GGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 106064 0.66 0.986793
Target:  5'- cUCGCCGgcggcaGGGgcgccgGCgCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaaCG-GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 70764 0.66 0.989656
Target:  5'- -gGCCGUUGGGgaccggcuagugUUUUUggagGCCCuagagaaGCGCGu -3'
miRNA:   3'- ggCGGUAACCU------------AAAAAa---CGGG-------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.