miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 6990 0.66 0.989792
Target:  5'- uUGCCGgcgUGGGUagUUUGuauaugcacaCCCGCGCc -3'
miRNA:   3'- gGCGGUa--ACCUAaaAAAC----------GGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 132130 0.66 0.989792
Target:  5'- aCCGCCccuAUUGGGcggcgcUGCugCCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa-ACG--GGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 91018 0.66 0.992229
Target:  5'- aCGCCGUgccggcGGAgcagcUGCCCG-GCGu -3'
miRNA:   3'- gGCGGUAa-----CCUaaaaaACGGGCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 29163 0.66 0.993261
Target:  5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3'
miRNA:   3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 128857 0.67 0.98316
Target:  5'- cUCGCCGa-GGuccgc-UGCCUGCGCGa -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 30644 0.66 0.987441
Target:  5'- aCGCCG-UGGAccccgagaacUGgCCGCGCGa -3'
miRNA:   3'- gGCGGUaACCUaaaaa-----ACgGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 58064 0.66 0.991076
Target:  5'- gCCGCCgAUUGGcgc----GCgCGCGCGc -3'
miRNA:   3'- -GGCGG-UAACCuaaaaaaCGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 32029 0.66 0.993261
Target:  5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3'
miRNA:   3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 32309 0.66 0.988065
Target:  5'- aCCcCCccgGGGUcgcaggggGCCCGCGCGg -3'
miRNA:   3'- -GGcGGuaaCCUAaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 61122 0.66 0.993261
Target:  5'- uCCGCCAgcGGcacgc--GCCgGCGCa -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaaCGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 74635 0.66 0.990578
Target:  5'- gCgGCCAUaaaaaGGcccgccgGCCCGCGCGc -3'
miRNA:   3'- -GgCGGUAa----CCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 60714 0.66 0.989656
Target:  5'- gCGcCCGUUGuGGUacauuacgucggcgGCCCGCGCGc -3'
miRNA:   3'- gGC-GGUAAC-CUAaaaaa---------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 91562 0.66 0.991552
Target:  5'- gCGCCAcgcUGGGgcgcgcgucGCCCGCgGCGa -3'
miRNA:   3'- gGCGGUa--ACCUaaaaaa---CGGGCG-CGC- -5'
6487 5' -50.9 NC_001847.1 + 10728 0.66 0.992229
Target:  5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3'
miRNA:   3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5'
6487 5' -50.9 NC_001847.1 + 54304 0.66 0.992964
Target:  5'- gCCGCCGcccGGAUc---UGCCCccccaagucgcggcGCGCGg -3'
miRNA:   3'- -GGCGGUaa-CCUAaaaaACGGG--------------CGCGC- -5'
6487 5' -50.9 NC_001847.1 + 119826 0.66 0.993261
Target:  5'- gCCGCgauCAUguacGGGUcgcgcacGCCCGCGCGc -3'
miRNA:   3'- -GGCG---GUAa---CCUAaaaaa--CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 56991 0.67 0.979053
Target:  5'- cUCGCCGggUGGGUaugagccgcagGCCgGCGCGc -3'
miRNA:   3'- -GGCGGUa-ACCUAaaaaa------CGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 80318 0.67 0.982555
Target:  5'- gCGCgGUUGuccaccaccgUGCCCGCGCu -3'
miRNA:   3'- gGCGgUAACcuaaaaa---ACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 88227 0.67 0.985061
Target:  5'- gCGCCucgccGGAgccgagGCCgGCGCGg -3'
miRNA:   3'- gGCGGuaa--CCUaaaaaaCGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 3251 0.66 0.986793
Target:  5'- cUCGCCGgcggcaGGGgcgccgGCgCCGCGCGg -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaaCG-GGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.