miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 91018 0.66 0.992229
Target:  5'- aCGCCGUgccggcGGAgcagcUGCCCG-GCGu -3'
miRNA:   3'- gGCGGUAa-----CCUaaaaaACGGGCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 10728 0.66 0.992229
Target:  5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3'
miRNA:   3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5'
6487 5' -50.9 NC_001847.1 + 133199 0.66 0.992229
Target:  5'- cUCGCUGgaGGAgcuc-UGCgCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACG-GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 524 0.66 0.992229
Target:  5'- uCCGCgGagGGcaag--UGCCCGaCGCGg -3'
miRNA:   3'- -GGCGgUaaCCuaaaaaACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 91562 0.66 0.991552
Target:  5'- gCGCCAcgcUGGGgcgcgcgucGCCCGCgGCGa -3'
miRNA:   3'- gGCGGUa--ACCUaaaaaa---CGGGCG-CGC- -5'
6487 5' -50.9 NC_001847.1 + 36979 0.66 0.991076
Target:  5'- gCGCCGgc-GAgcgg--GCCCGCGCc -3'
miRNA:   3'- gGCGGUaacCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 104900 0.66 0.991076
Target:  5'- gCGCCccgcGGG------GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa-CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 74615 0.66 0.991076
Target:  5'- aCGCCAUcgugcagcUGGGcagc--GCCuCGCGCGa -3'
miRNA:   3'- gGCGGUA--------ACCUaaaaaaCGG-GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 40956 0.66 0.991076
Target:  5'- gCGCCuc--GAac---UGCCCGCGCGa -3'
miRNA:   3'- gGCGGuaacCUaaaaaACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 58064 0.66 0.991076
Target:  5'- gCCGCCgAUUGGcgc----GCgCGCGCGc -3'
miRNA:   3'- -GGCGG-UAACCuaaaaaaCGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 2087 0.66 0.991076
Target:  5'- gCGCCccgcGGG------GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa-CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 118222 0.66 0.990705
Target:  5'- aCGCaucgcUGGAgugcaacucccGCCCGCGCGa -3'
miRNA:   3'- gGCGgua--ACCUaaaaaa-----CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 74635 0.66 0.990578
Target:  5'- gCgGCCAUaaaaaGGcccgccgGCCCGCGCGc -3'
miRNA:   3'- -GgCGGUAa----CCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 8041 0.66 0.990451
Target:  5'- -aGCCcggUGGAcccaaagccgcgcgGCCCGCGCGc -3'
miRNA:   3'- ggCGGua-ACCUaaaaaa--------CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 115899 0.66 0.989792
Target:  5'- gCGCCGcUUGGccg----GCUCGCGCa -3'
miRNA:   3'- gGCGGU-AACCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 132130 0.66 0.989792
Target:  5'- aCCGCCccuAUUGGGcggcgcUGCugCCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa-ACG--GGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 109803 0.66 0.989792
Target:  5'- uUGCCGgcgUGGGUagUUUGuauaugcacaCCCGCGCc -3'
miRNA:   3'- gGCGGUa--ACCUAaaAAAC----------GGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 34096 0.66 0.989792
Target:  5'- gCCGCCGUg---------GCUCGCGCGg -3'
miRNA:   3'- -GGCGGUAaccuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 29194 0.66 0.989792
Target:  5'- gCUGCCGUugcUGGGgc---UGCCCGacgGCGg -3'
miRNA:   3'- -GGCGGUA---ACCUaaaaaACGGGCg--CGC- -5'
6487 5' -50.9 NC_001847.1 + 68746 0.66 0.989792
Target:  5'- gCGCCGc-GGAUg---UGCgCGCGUGa -3'
miRNA:   3'- gGCGGUaaCCUAaaaaACGgGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.