miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 3' -58.2 NC_001847.1 + 102244 0.68 0.632149
Target:  5'- gUCCAGGcGCUCGCGCgCGGcGCgCAc--- -3'
miRNA:   3'- -GGGUCC-CGAGCGUGaGCC-CG-GUuauu -5'
6488 3' -58.2 NC_001847.1 + 42987 0.68 0.632149
Target:  5'- gCCC-GGGUUCGCugUCggcGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGAGCGugAG---CCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 134864 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 32051 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 72823 0.69 0.621891
Target:  5'- aUCGGGGCcaUgGCGCUCGGGCg----- -3'
miRNA:   3'- gGGUCCCG--AgCGUGAGCCCGguuauu -5'
6488 3' -58.2 NC_001847.1 + 122872 0.69 0.621891
Target:  5'- uUCCGGGGC--GCGCUCGGGUgGu--- -3'
miRNA:   3'- -GGGUCCCGagCGUGAGCCCGgUuauu -5'
6488 3' -58.2 NC_001847.1 + 98047 0.69 0.611642
Target:  5'- aCCAgcGGGCcgcucucCGCGCUCaggcGGGCCAGUAc -3'
miRNA:   3'- gGGU--CCCGa------GCGUGAG----CCCGGUUAUu -5'
6488 3' -58.2 NC_001847.1 + 19626 0.69 0.611642
Target:  5'- gCCCGGGGCgccggcgucggCGCGCggccgcuugCGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa----------GCGUGa--------GCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 43593 0.69 0.611642
Target:  5'- cCCCAGcGUg-GCGCUgGGGCCGGUGc -3'
miRNA:   3'- -GGGUCcCGagCGUGAgCCCGGUUAUu -5'
6488 3' -58.2 NC_001847.1 + 103487 0.69 0.601408
Target:  5'- cCUCGGGGCgcgCGgGCUCcGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa--GCgUGAG-CCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 97469 0.69 0.600386
Target:  5'- gCCAGGGCcgCGCGCUaagcccgCGGGCUu---- -3'
miRNA:   3'- gGGUCCCGa-GCGUGA-------GCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 58834 0.69 0.591198
Target:  5'- gCgAGGGUcgGCACUUGGGCCGGg-- -3'
miRNA:   3'- gGgUCCCGagCGUGAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 68830 0.69 0.581017
Target:  5'- gCCgCAGGGCgccgCGaagaGCUCGGGCgCGAg-- -3'
miRNA:   3'- -GG-GUCCCGa---GCg---UGAGCCCG-GUUauu -5'
6488 3' -58.2 NC_001847.1 + 79557 0.69 0.570873
Target:  5'- gCUGGGGCUCGCggggggcgccggGCUCGcGGCCu---- -3'
miRNA:   3'- gGGUCCCGAGCG------------UGAGC-CCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 115534 0.69 0.570873
Target:  5'- gCCCcGGGCcCGaGCUCGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 62792 0.69 0.570873
Target:  5'- gCCCgggGGGGCgagaucgCGCACaagcCGGGCCGAg-- -3'
miRNA:   3'- -GGG---UCCCGa------GCGUGa---GCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 43642 0.69 0.570873
Target:  5'- -aCAGGGCgcgggCGCACgaCGGGCgAGUGu -3'
miRNA:   3'- ggGUCCCGa----GCGUGa-GCCCGgUUAUu -5'
6488 3' -58.2 NC_001847.1 + 123517 0.7 0.560772
Target:  5'- gCCAGGGCUgcCGCggGCUCGgcuaaGGCCAAg-- -3'
miRNA:   3'- gGGUCCCGA--GCG--UGAGC-----CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 107729 0.7 0.560772
Target:  5'- cCCCGGGGCUa-CAaccCUUGGGCCGGc-- -3'
miRNA:   3'- -GGGUCCCGAgcGU---GAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 53017 0.7 0.540726
Target:  5'- -aCAGcGGCggccgcugCGCGCUCGGGCCu---- -3'
miRNA:   3'- ggGUC-CCGa-------GCGUGAGCCCGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.