miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 3' -58.2 NC_001847.1 + 119268 0.67 0.70348
Target:  5'- gCCCGcGcGGCUCGUcga-GGGCCAGUAc -3'
miRNA:   3'- -GGGU-C-CCGAGCGugagCCCGGUUAUu -5'
6488 3' -58.2 NC_001847.1 + 118878 0.7 0.511133
Target:  5'- aCCCGGGcGCUCgguGCACg-GGGCCGGg-- -3'
miRNA:   3'- -GGGUCC-CGAG---CGUGagCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 116418 0.74 0.321255
Target:  5'- gCCCcGGGCcgCGCGCUUGGGCuCGAg-- -3'
miRNA:   3'- -GGGuCCCGa-GCGUGAGCCCG-GUUauu -5'
6488 3' -58.2 NC_001847.1 + 115534 0.69 0.570873
Target:  5'- gCCCcGGGCcCGaGCUCGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 115111 0.66 0.790372
Target:  5'- gCCCAGGGCggcggcCGCA---GGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGa-----GCGUgagCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 114089 0.66 0.771831
Target:  5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3'
miRNA:   3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5'
6488 3' -58.2 NC_001847.1 + 113393 0.67 0.7135
Target:  5'- gCCGGcGGCcccccCGCGCgcgCGGGCCGGc-- -3'
miRNA:   3'- gGGUC-CCGa----GCGUGa--GCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 113215 0.76 0.260293
Target:  5'- gCUCGGacuccGGCUCGCGCUCGGaGCCAGa-- -3'
miRNA:   3'- -GGGUC-----CCGAGCGUGAGCC-CGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 111288 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 107729 0.7 0.560772
Target:  5'- cCCCGGGGCUa-CAaccCUUGGGCCGGc-- -3'
miRNA:   3'- -GGGUCCCGAgcGU---GAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 106933 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 106624 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 106519 0.66 0.781169
Target:  5'- aCCCGcGGGCacuagCGC-CUCGGGCg----- -3'
miRNA:   3'- -GGGU-CCCGa----GCGuGAGCCCGguuauu -5'
6488 3' -58.2 NC_001847.1 + 105957 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 105797 0.67 0.70348
Target:  5'- gCCGGGGCcgCGCGCU-GGaGCCGc--- -3'
miRNA:   3'- gGGUCCCGa-GCGUGAgCC-CGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 105350 0.66 0.762368
Target:  5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3'
miRNA:   3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 104904 0.73 0.383906
Target:  5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3'
miRNA:   3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5'
6488 3' -58.2 NC_001847.1 + 104386 0.68 0.683268
Target:  5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3'
miRNA:   3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 103487 0.69 0.601408
Target:  5'- cCUCGGGGCgcgCGgGCUCcGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa--GCgUGAG-CCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 103115 0.68 0.683268
Target:  5'- gCgGGGGCUucccCGCGCgagcgCGGGCCGc--- -3'
miRNA:   3'- gGgUCCCGA----GCGUGa----GCCCGGUuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.