miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 3' -58.2 NC_001847.1 + 39055 0.71 0.472776
Target:  5'- uCCCgcucguGGGGCUCGCGCagCGGGUUGAg-- -3'
miRNA:   3'- -GGG------UCCCGAGCGUGa-GCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 37037 0.71 0.491782
Target:  5'- gCC-GGGCUCGCACUCuagccuGGGCUGGg-- -3'
miRNA:   3'- gGGuCCCGAGCGUGAG------CCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 37128 0.71 0.501416
Target:  5'- cUCUGGGGCgCGCACgcccagCGGGCCuuUGGg -3'
miRNA:   3'- -GGGUCCCGaGCGUGa-----GCCCGGuuAUU- -5'
6488 3' -58.2 NC_001847.1 + 118878 0.7 0.511133
Target:  5'- aCCCGGGcGCUCgguGCACg-GGGCCGGg-- -3'
miRNA:   3'- -GGGUCC-CGAG---CGUGagCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 43006 0.7 0.530793
Target:  5'- gCCgGGGGggCGCGC-CGGGCCGc--- -3'
miRNA:   3'- -GGgUCCCgaGCGUGaGCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 27641 0.7 0.540726
Target:  5'- gCUCGGcaCUCGCGCUCGGGUCGGg-- -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 134208 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 53017 0.7 0.540726
Target:  5'- -aCAGcGGCggccgcugCGCGCUCGGGCCu---- -3'
miRNA:   3'- ggGUC-CCGa-------GCGUGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 68791 0.7 0.540726
Target:  5'- gCCgCGGcGGC-CGCGCgagCGGGCCGAc-- -3'
miRNA:   3'- -GG-GUC-CCGaGCGUGa--GCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 31395 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 107729 0.7 0.560772
Target:  5'- cCCCGGGGCUa-CAaccCUUGGGCCGGc-- -3'
miRNA:   3'- -GGGUCCCGAgcGU---GAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 123517 0.7 0.560772
Target:  5'- gCCAGGGCUgcCGCggGCUCGgcuaaGGCCAAg-- -3'
miRNA:   3'- gGGUCCCGA--GCG--UGAGC-----CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 79557 0.69 0.570873
Target:  5'- gCUGGGGCUCGCggggggcgccggGCUCGcGGCCu---- -3'
miRNA:   3'- gGGUCCCGAGCG------------UGAGC-CCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 115534 0.69 0.570873
Target:  5'- gCCCcGGGCcCGaGCUCGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 62792 0.69 0.570873
Target:  5'- gCCCgggGGGGCgagaucgCGCACaagcCGGGCCGAg-- -3'
miRNA:   3'- -GGG---UCCCGa------GCGUGa---GCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 43642 0.69 0.570873
Target:  5'- -aCAGGGCgcgggCGCACgaCGGGCgAGUGu -3'
miRNA:   3'- ggGUCCCGa----GCGUGa-GCCCGgUUAUu -5'
6488 3' -58.2 NC_001847.1 + 68830 0.69 0.581017
Target:  5'- gCCgCAGGGCgccgCGaagaGCUCGGGCgCGAg-- -3'
miRNA:   3'- -GG-GUCCCGa---GCg---UGAGCCCG-GUUauu -5'
6488 3' -58.2 NC_001847.1 + 58834 0.69 0.591198
Target:  5'- gCgAGGGUcgGCACUUGGGCCGGg-- -3'
miRNA:   3'- gGgUCCCGagCGUGAGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 97469 0.69 0.600386
Target:  5'- gCCAGGGCcgCGCGCUaagcccgCGGGCUu---- -3'
miRNA:   3'- gGGUCCCGa-GCGUGA-------GCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 103487 0.69 0.601408
Target:  5'- cCUCGGGGCgcgCGgGCUCcGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa--GCgUGAG-CCCGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.