miRNA display CGI


Results 41 - 60 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 6679 0.66 0.894246
Target:  5'- -cUAGG-CCGCGGcGGCCgGCCG-GGCg -3'
miRNA:   3'- auAUUUaGGCGUC-UCGGgCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 106019 0.66 0.907352
Target:  5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3'
miRNA:   3'- auauUUAGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 2333 0.66 0.907352
Target:  5'- -----cUgCGCGGAaCCCGCCGUuuuGCa -3'
miRNA:   3'- auauuuAgGCGUCUcGGGCGGCGu--CG- -5'
6491 3' -55 NC_001847.1 + 82224 0.66 0.907352
Target:  5'- -----cUUCGCGGGcGCCCcgaGCCGCuGCc -3'
miRNA:   3'- auauuuAGGCGUCU-CGGG---CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 102162 0.66 0.907352
Target:  5'- ------gCCGCccuGCCCGCCcCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 107194 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 3223 0.66 0.900922
Target:  5'- cGUGccUCCGCG----CCGCCGCGGCu -3'
miRNA:   3'- aUAUuuAGGCGUcucgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 117354 0.66 0.900922
Target:  5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3'
miRNA:   3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5'
6491 3' -55 NC_001847.1 + 88336 0.66 0.900922
Target:  5'- ------gCCGCGcGGGCCUgugcucgucuGCCGUAGCc -3'
miRNA:   3'- auauuuaGGCGU-CUCGGG----------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 74662 0.66 0.900922
Target:  5'- -----cUgCGCcuGGAGCCggccgaGCCGCGGCa -3'
miRNA:   3'- auauuuAgGCG--UCUCGGg-----CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 92398 0.66 0.894246
Target:  5'- -cUGGAUCUGCuGuccGcCCCGCCGCccGCg -3'
miRNA:   3'- auAUUUAGGCGuCu--C-GGGCGGCGu-CG- -5'
6491 3' -55 NC_001847.1 + 129931 0.66 0.887328
Target:  5'- ------cCCGCc--GgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104438 0.66 0.900922
Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3'
miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 82987 0.66 0.880172
Target:  5'- -----cUCCgGCGGAGCCUGgCCaCGGCc -3'
miRNA:   3'- auauuuAGG-CGUCUCGGGC-GGcGUCG- -5'
6491 3' -55 NC_001847.1 + 17689 0.66 0.880172
Target:  5'- ------aCCGcCAGuggcguugucGGCCaCGCCGCAGUg -3'
miRNA:   3'- auauuuaGGC-GUC----------UCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 116931 0.66 0.887328
Target:  5'- --gAGAgCCGCAcAGCCCGuaCCGCuGCc -3'
miRNA:   3'- auaUUUaGGCGUcUCGGGC--GGCGuCG- -5'
6491 3' -55 NC_001847.1 + 107152 0.66 0.880172
Target:  5'- ------gCCGCGGccgccuccGCCCcgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu-------CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 19244 0.66 0.880172
Target:  5'- ------cCUGCGcGAGCCgGCCaaGCGGCg -3'
miRNA:   3'- auauuuaGGCGU-CUCGGgCGG--CGUCG- -5'
6491 3' -55 NC_001847.1 + 38682 0.66 0.880172
Target:  5'- ------cCCGCA-AGCCUGgucuCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGUcUCGGGC----GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 55575 0.66 0.907352
Target:  5'- --aGAggCCGC-GAGCCCGgCGCcccccGCg -3'
miRNA:   3'- auaUUuaGGCGuCUCGGGCgGCGu----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.