miRNA display CGI


Results 21 - 40 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 51955 0.65 0.913534
Target:  5'- ------gCCGCGcGAcCCCGCgGCAGUg -3'
miRNA:   3'- auauuuaGGCGU-CUcGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 62914 0.65 0.913534
Target:  5'- --cGGGUgCuCGGGGCCCGCgGgCGGCu -3'
miRNA:   3'- auaUUUAgGcGUCUCGGGCGgC-GUCG- -5'
6491 3' -55 NC_001847.1 + 117354 0.66 0.900922
Target:  5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3'
miRNA:   3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5'
6491 3' -55 NC_001847.1 + 18456 0.66 0.894246
Target:  5'- -------gUGCGGuGCCgCGCCcGCAGCg -3'
miRNA:   3'- auauuuagGCGUCuCGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 107194 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 129931 0.66 0.887328
Target:  5'- ------cCCGCc--GgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 6679 0.66 0.894246
Target:  5'- -cUAGG-CCGCGGcGGCCgGCCG-GGCg -3'
miRNA:   3'- auAUUUaGGCGUC-UCGGgCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 123159 0.66 0.887328
Target:  5'- --cGGGUuuGCGcGAGCCC-CCGCcaacGGCa -3'
miRNA:   3'- auaUUUAggCGU-CUCGGGcGGCG----UCG- -5'
6491 3' -55 NC_001847.1 + 87673 0.66 0.893566
Target:  5'- ------gCCGCAuGGCCCgggcgcuggggcuGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUcUCGGG-------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 92718 0.66 0.900266
Target:  5'- ------cUgGCAGAGCCuCGCgugcucgCGCAGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGG-GCG-------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 39512 0.66 0.894246
Target:  5'- ------cCCGCgccAGAgcgGCCCGCCaCAGCg -3'
miRNA:   3'- auauuuaGGCG---UCU---CGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 106053 0.66 0.900922
Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 21499 0.66 0.900922
Target:  5'- --gGAAUuuGCcGGGCgCGCCuCGGCg -3'
miRNA:   3'- auaUUUAggCGuCUCGgGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 92398 0.66 0.894246
Target:  5'- -cUGGAUCUGCuGuccGcCCCGCCGCccGCg -3'
miRNA:   3'- auAUUUAGGCGuCu--C-GGGCGGCGu-CG- -5'
6491 3' -55 NC_001847.1 + 104438 0.66 0.900922
Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3'
miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 101415 0.66 0.894246
Target:  5'- --gGGGUCuCGUcu--CCCGCCGCGGCu -3'
miRNA:   3'- auaUUUAG-GCGucucGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 7287 0.66 0.894246
Target:  5'- -----cUCCGCAguacGAGCCgcUGgCGCGGCg -3'
miRNA:   3'- auauuuAGGCGU----CUCGG--GCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 74662 0.66 0.900922
Target:  5'- -----cUgCGCcuGGAGCCggccgaGCCGCGGCa -3'
miRNA:   3'- auauuuAgGCG--UCUCGGg-----CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 88336 0.66 0.900922
Target:  5'- ------gCCGCGcGGGCCUgugcucgucuGCCGUAGCc -3'
miRNA:   3'- auauuuaGGCGU-CUCGGG----------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 34768 0.66 0.900922
Target:  5'- -------gCGCGGcuGCgCGCCGCGGCc -3'
miRNA:   3'- auauuuagGCGUCu-CGgGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.