miRNA display CGI


Results 21 - 40 of 627 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 103179 0.77 0.316948
Target:  5'- ----cGUCCaCGGGGCCCGCCGCcGCc -3'
miRNA:   3'- auauuUAGGcGUCUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 30306 0.77 0.33989
Target:  5'- gUGUGAAgCUGCGGAcGCCCGCCcccccgGCGGCg -3'
miRNA:   3'- -AUAUUUaGGCGUCU-CGGGCGG------CGUCG- -5'
6491 3' -55 NC_001847.1 + 100540 0.76 0.35584
Target:  5'- aGUGGGUgggCGgGGAGCCgGCCGCGGCg -3'
miRNA:   3'- aUAUUUAg--GCgUCUCGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 72990 0.76 0.364011
Target:  5'- ------cCCGCgcgGGAGCUgGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCG---UCUCGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 115791 0.76 0.372311
Target:  5'- ----cGUUCGCGGAG-CCGCUGCGGCu -3'
miRNA:   3'- auauuUAGGCGUCUCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 39466 0.76 0.37989
Target:  5'- gUGUcgGUCUGCAGugccauggagaccAGCCCGCCGC-GCa -3'
miRNA:   3'- -AUAuuUAGGCGUC-------------UCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 41332 0.76 0.380738
Target:  5'- --aAAGUCCaGCGGGGacucggCCGCCGCGGCc -3'
miRNA:   3'- auaUUUAGG-CGUCUCg-----GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 103918 0.76 0.380738
Target:  5'- ------gCCGCGGgcGGCgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC--UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1105 0.76 0.380738
Target:  5'- ------gCCGCGGgcGGCgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC--UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 101959 0.75 0.405887
Target:  5'- --cAAGUCgggCGCAGAGCcggccagCCGCUGCAGCg -3'
miRNA:   3'- auaUUUAG---GCGUCUCG-------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 13133 0.75 0.406773
Target:  5'- --cGGcgCCGCGccGCCUGCCGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUcuCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 70895 0.75 0.415696
Target:  5'- ---uAGUCCcCuAGGGCCCGCCGUGGCc -3'
miRNA:   3'- auauUUAGGcG-UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 98791 0.75 0.415696
Target:  5'- --cGGcgCCGCGuGGCgCGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUcUCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 101633 0.75 0.415696
Target:  5'- -----cUCCGCGGcggcGCCCGCCGCcGCc -3'
miRNA:   3'- auauuuAGGCGUCu---CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 2600 0.75 0.424738
Target:  5'- ------gCCGCAcgcGAGCCCGCCGC-GCc -3'
miRNA:   3'- auauuuaGGCGU---CUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 33764 0.75 0.424738
Target:  5'- --cGGcgCCGCGGgcAGCCC-CCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUC--UCGGGcGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 112740 0.75 0.432976
Target:  5'- ------cCCGCGGAcgagcacGCUCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCU-------CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 9927 0.75 0.432976
Target:  5'- ------cCCGCGGAcgagcacGCUCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCU-------CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 83806 0.75 0.432976
Target:  5'- cGUGAGgaagCCGCcguuGAGCaggucaugaagcgCCGCCGCAGCa -3'
miRNA:   3'- aUAUUUa---GGCGu---CUCG-------------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 50053 0.75 0.433897
Target:  5'- gGUGGcggCCGCGG-GUCCGCgCGCGGCg -3'
miRNA:   3'- aUAUUua-GGCGUCuCGGGCG-GCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.