Results 21 - 40 of 627 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 3' | -55 | NC_001847.1 | + | 71899 | 0.65 | 0.913534 |
Target: 5'- gAUGGcgCUGCAGcggcGGaCCCGgCgCGCGGCg -3' miRNA: 3'- aUAUUuaGGCGUC----UC-GGGC-G-GCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 105906 | 0.65 | 0.913534 |
Target: 5'- ------gCCGCGGGGCCaUGCaGUGGCg -3' miRNA: 3'- auauuuaGGCGUCUCGG-GCGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 102162 | 0.66 | 0.907352 |
Target: 5'- ------gCCGCccuGCCCGCCcCGGCg -3' miRNA: 3'- auauuuaGGCGucuCGGGCGGcGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 55575 | 0.66 | 0.907352 |
Target: 5'- --aGAggCCGC-GAGCCCGgCGCcccccGCg -3' miRNA: 3'- auaUUuaGGCGuCUCGGGCgGCGu----CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 51909 | 0.66 | 0.907352 |
Target: 5'- ------gCCGCc--GCCCcgGCCGCGGCg -3' miRNA: 3'- auauuuaGGCGucuCGGG--CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 75444 | 0.66 | 0.907352 |
Target: 5'- ------aCCGCGGAGUCCugGCUGCuguuGCc -3' miRNA: 3'- auauuuaGGCGUCUCGGG--CGGCGu---CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 74587 | 0.66 | 0.907352 |
Target: 5'- -------aCGCAGGGCCUGCagGaCGGCg -3' miRNA: 3'- auauuuagGCGUCUCGGGCGg-C-GUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 55311 | 0.66 | 0.907352 |
Target: 5'- --aGAcgCCGCGGucGCCCacuuCCgGCAGCg -3' miRNA: 3'- auaUUuaGGCGUCu-CGGGc---GG-CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 67702 | 0.66 | 0.907352 |
Target: 5'- -----cUCgGCGaggugcucGAGCgCGCCGUAGCa -3' miRNA: 3'- auauuuAGgCGU--------CUCGgGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 2333 | 0.66 | 0.907352 |
Target: 5'- -----cUgCGCGGAaCCCGCCGUuuuGCa -3' miRNA: 3'- auauuuAgGCGUCUcGGGCGGCGu--CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 38076 | 0.66 | 0.907352 |
Target: 5'- -------gCGCGGcGgCCGCCGCGGUc -3' miRNA: 3'- auauuuagGCGUCuCgGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 38953 | 0.66 | 0.907352 |
Target: 5'- --gGGggCCGC-GAGCgCCauggcggcgGCCGCGGCg -3' miRNA: 3'- auaUUuaGGCGuCUCG-GG---------CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 3206 | 0.66 | 0.907352 |
Target: 5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3' miRNA: 3'- auauUUAGGCGucUCGGGCGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 51973 | 0.66 | 0.907352 |
Target: 5'- ----cGUCCGCc-AGCCCGUCG-GGCg -3' miRNA: 3'- auauuUAGGCGucUCGGGCGGCgUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 58262 | 0.66 | 0.907352 |
Target: 5'- -----cUCCGuCAGgcaGGCCUccaugugcucgGCCGCGGCg -3' miRNA: 3'- auauuuAGGC-GUC---UCGGG-----------CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 99266 | 0.66 | 0.907352 |
Target: 5'- ------gCCGCcGAcuccaGCugCCGCCGCAGCg -3' miRNA: 3'- auauuuaGGCGuCU-----CG--GGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 106019 | 0.66 | 0.907352 |
Target: 5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3' miRNA: 3'- auauUUAGGCGucUCGGGCGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 12560 | 0.66 | 0.907352 |
Target: 5'- --cAGGUgCGCAacGGGCgCCGCguaCGCGGCg -3' miRNA: 3'- auaUUUAgGCGU--CUCG-GGCG---GCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 82224 | 0.66 | 0.907352 |
Target: 5'- -----cUUCGCGGGcGCCCcgaGCCGCuGCc -3' miRNA: 3'- auauuuAGGCGUCU-CGGG---CGGCGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 72661 | 0.66 | 0.906721 |
Target: 5'- ------cCCGCGGccGCCCGCCGgcgacccCGGCc -3' miRNA: 3'- auauuuaGGCGUCu-CGGGCGGC-------GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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