miRNA display CGI

Results 41 - 60 of 627 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6491	3'	-55	NC_001847.1	+	72661	0.66	0.906721
	Target:  5'- ------cCCGCGGccGCCCGCCGgcgacccCGGCc -3' miRNA:   3'- auauuuaGGCGUCu-CGGGCGGC-------GUCG- -5'
6491	3'	-55	NC_001847.1	+	104438	0.66	0.900922
	Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3' miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491	3'	-55	NC_001847.1	+	90619	0.66	0.900922
	Target:  5'- ------aCCGC-GAGCUCGCgGaCGGCg -3' miRNA:   3'- auauuuaGGCGuCUCGGGCGgC-GUCG- -5'
6491	3'	-55	NC_001847.1	+	3240	0.66	0.900922
	Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3' miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491	3'	-55	NC_001847.1	+	106663	0.66	0.900922
	Target:  5'- --cGGcgCCGCGGcGUCCGCgGC-GCg -3' miRNA:   3'- auaUUuaGGCGUCuCGGGCGgCGuCG- -5'
6491	3'	-55	NC_001847.1	+	15529	0.66	0.900922
	Target:  5'- --gGGAgCCGCGGGcuGCUggCGCCGguGCg -3' miRNA:   3'- auaUUUaGGCGUCU--CGG--GCGGCguCG- -5'
6491	3'	-55	NC_001847.1	+	101370	0.66	0.900922
	Target:  5'- ------cCCGCGaAGCCCugcaGCgGCAGCa -3' miRNA:   3'- auauuuaGGCGUcUCGGG----CGgCGUCG- -5'
6491	3'	-55	NC_001847.1	+	44072	0.66	0.900922
	Target:  5'- cGUGcagCUGUcGuGCCUGCUGCGGCg -3' miRNA:   3'- aUAUuuaGGCGuCuCGGGCGGCGUCG- -5'
6491	3'	-55	NC_001847.1	+	21945	0.66	0.900922
	Target:  5'- ------aCCGC--GGCUCGCgGCGGCa -3' miRNA:   3'- auauuuaGGCGucUCGGGCGgCGUCG- -5'
6491	3'	-55	NC_001847.1	+	53963	0.66	0.900922
	Target:  5'- -cUGGcgCCGCcgcGAGCCCuCCgaGCGGCg -3' miRNA:   3'- auAUUuaGGCGu--CUCGGGcGG--CGUCG- -5'
6491	3'	-55	NC_001847.1	+	21499	0.66	0.900922
	Target:  5'- --gGAAUuuGCcGGGCgCGCCuCGGCg -3' miRNA:   3'- auaUUUAggCGuCUCGgGCGGcGUCG- -5'
6491	3'	-55	NC_001847.1	+	117354	0.66	0.900922
	Target:  5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3' miRNA:   3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5'
6491	3'	-55	NC_001847.1	+	88336	0.66	0.900922
	Target:  5'- ------gCCGCGcGGGCCUgugcucgucuGCCGUAGCc -3' miRNA:   3'- auauuuaGGCGU-CUCGGG----------CGGCGUCG- -5'
6491	3'	-55	NC_001847.1	+	106053	0.66	0.900922
	Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3' miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491	3'	-55	NC_001847.1	+	55452	0.66	0.900922
	Target:  5'- ----cAUCCGCAaagccaccGAGCCCGUauucgaggagauCGUGGCg -3' miRNA:   3'- auauuUAGGCGU--------CUCGGGCG------------GCGUCG- -5'
6491	3'	-55	NC_001847.1	+	34768	0.66	0.900922
	Target:  5'- -------gCGCGGcuGCgCGCCGCGGCc -3' miRNA:   3'- auauuuagGCGUCu-CGgGCGGCGUCG- -5'
6491	3'	-55	NC_001847.1	+	3223	0.66	0.900922
	Target:  5'- cGUGccUCCGCG----CCGCCGCGGCu -3' miRNA:   3'- aUAUuuAGGCGUcucgGGCGGCGUCG- -5'
6491	3'	-55	NC_001847.1	+	74662	0.66	0.900922
	Target:  5'- -----cUgCGCcuGGAGCCggccgaGCCGCGGCa -3' miRNA:   3'- auauuuAgGCG--UCUCGGg-----CGGCGUCG- -5'
6491	3'	-55	NC_001847.1	+	134179	0.66	0.900922
	Target:  5'- -------gCGCauAGAcGCCCGgCGCAGCg -3' miRNA:   3'- auauuuagGCG--UCU-CGGGCgGCGUCG- -5'
6491	3'	-55	NC_001847.1	+	55174	0.66	0.900922
	Target:  5'- -------aCGCGGGGCgCGCUGgAGCu -3' miRNA:   3'- auauuuagGCGUCUCGgGCGGCgUCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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