miRNA display CGI


Results 21 - 40 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 2600 0.75 0.424738
Target:  5'- ------gCCGCAcgcGAGCCCGCCGC-GCc -3'
miRNA:   3'- auauuuaGGCGU---CUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 2686 0.67 0.849268
Target:  5'- ----cGUCCuCcGGGUCCGCCcGCGGCg -3'
miRNA:   3'- auauuUAGGcGuCUCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 3017 0.66 0.880172
Target:  5'- ------aCCGCGucgcGGGCCgCGCCgaGCAGCu -3'
miRNA:   3'- auauuuaGGCGU----CUCGG-GCGG--CGUCG- -5'
6491 3' -55 NC_001847.1 + 3098 0.79 0.268018
Target:  5'- ------gCCGCGGccggcaggccgcGGCCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC------------UCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 3206 0.66 0.907352
Target:  5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3'
miRNA:   3'- auauUUAGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 3223 0.66 0.900922
Target:  5'- cGUGccUCCGCG----CCGCCGCGGCu -3'
miRNA:   3'- aUAUuuAGGCGUcucgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 3240 0.66 0.900922
Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 3372 0.67 0.852516
Target:  5'- ---cAAUCCGCGcgccGAGCCgCGCaaagcccuccgcaaGCAGCg -3'
miRNA:   3'- auauUUAGGCGU----CUCGG-GCGg-------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 3611 0.67 0.865163
Target:  5'- -----cUCUGCAGccaGGCCauggCGUCGCGGCg -3'
miRNA:   3'- auauuuAGGCGUC---UCGG----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 3707 0.67 0.872781
Target:  5'- ------gCCGCGG-GCCCcgcgGCCGCcGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGG----CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 3871 0.67 0.865163
Target:  5'- -----cUCCaGCGGcggcGGCCCGUCGCgcGGCg -3'
miRNA:   3'- auauuuAGG-CGUC----UCGGGCGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 4339 0.66 0.880172
Target:  5'- ------gCCGCGGccgccuccGCCCcgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu-------CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 4381 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 4887 0.7 0.728692
Target:  5'- ------gCgGCAGGGCCCccgcGCCGCuGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGGG----CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 5184 0.67 0.838486
Target:  5'- ------aCCGCGGcgcgggagaAGCCCucgccggcucucucGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUC---------UCGGG--------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 5637 0.68 0.823883
Target:  5'- ------cCCGCgcgcgccaaAGAGCCCGUC-CAGCg -3'
miRNA:   3'- auauuuaGGCG---------UCUCGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 5741 0.69 0.768384
Target:  5'- ------cCCGCGGGGCgguUCGCCGCcaAGCu -3'
miRNA:   3'- auauuuaGGCGUCUCG---GGCGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 6362 0.69 0.778011
Target:  5'- ------gCCGCGGGcGUagCCGCUGCGGCa -3'
miRNA:   3'- auauuuaGGCGUCU-CG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 6614 0.67 0.841005
Target:  5'- ------cCUGUgugaAGGGCCCaGCCGCGGUg -3'
miRNA:   3'- auauuuaGGCG----UCUCGGG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 6679 0.66 0.894246
Target:  5'- -cUAGG-CCGCGGcGGCCgGCCG-GGCg -3'
miRNA:   3'- auAUUUaGGCGUC-UCGGgCGGCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.