miRNA display CGI


Results 1 - 20 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 280 0.68 0.815042
Target:  5'- --gGGggCCGCcGAGCCCG-CGCGGg -3'
miRNA:   3'- auaUUuaGGCGuCUCGGGCgGCGUCg -5'
6491 3' -55 NC_001847.1 + 522 0.68 0.806025
Target:  5'- ----uGUCCGCGGAgggcaaguGCCCGaCGCGGg -3'
miRNA:   3'- auauuUAGGCGUCU--------CGGGCgGCGUCg -5'
6491 3' -55 NC_001847.1 + 602 0.67 0.857324
Target:  5'- -----cUCCGCGGccGCuCCGCaGCGGCg -3'
miRNA:   3'- auauuuAGGCGUCu-CG-GGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 889 0.73 0.541335
Target:  5'- ------cCCGCGccGGGgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGU--CUCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 980 0.74 0.462042
Target:  5'- ------gCCgGCGGGGCuuCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGG-CGUCUCG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1030 0.7 0.697961
Target:  5'- ------cCCGC--GGCgCGCCGCAGCa -3'
miRNA:   3'- auauuuaGGCGucUCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1105 0.76 0.380738
Target:  5'- ------gCCGCGGgcGGCgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC--UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1177 0.68 0.815042
Target:  5'- -------gCGCAGAagGCcaCCGCCGCGGCc -3'
miRNA:   3'- auauuuagGCGUCU--CG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1236 0.7 0.728692
Target:  5'- ------cCCGCAG-GCCagguacaccgGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGg---------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1479 0.68 0.806025
Target:  5'- ------gCgGCAGAGCCgcaGCgGCGGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGGg--CGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 1625 0.66 0.900922
Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3'
miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 1724 0.67 0.872781
Target:  5'- ------gCCGCc--GCCgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGucuCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 1899 0.84 0.117406
Target:  5'- --cAGcgCCGCgagcgcgugcgAGAGCCCGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCG-----------UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 2018 0.66 0.877979
Target:  5'- ------gCCGCAGGuuuuccagcacggcGCCgGCCGUGGCc -3'
miRNA:   3'- auauuuaGGCGUCU--------------CGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 2033 0.72 0.558812
Target:  5'- --gGGGUCCGCgaucugcgacauccAGGccacGCgCCGCCGCAGCg -3'
miRNA:   3'- auaUUUAGGCG--------------UCU----CG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 2091 0.8 0.236935
Target:  5'- ------cCCGCGGGGCCCGC-GCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 2166 0.7 0.708277
Target:  5'- --cAGGUCuCGCAGcGCCCgcGCCGCcugGGCg -3'
miRNA:   3'- auaUUUAG-GCGUCuCGGG--CGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 2184 0.73 0.531139
Target:  5'- ---uGGUCCGC-GAGCCgCGCCGCgaccucggGGCg -3'
miRNA:   3'- auauUUAGGCGuCUCGG-GCGGCG--------UCG- -5'
6491 3' -55 NC_001847.1 + 2333 0.66 0.907352
Target:  5'- -----cUgCGCGGAaCCCGCCGUuuuGCa -3'
miRNA:   3'- auauuuAgGCGUCUcGGGCGGCGu--CG- -5'
6491 3' -55 NC_001847.1 + 2421 0.7 0.677166
Target:  5'- ------cCCGaGGGGCCCcCCGCGGCg -3'
miRNA:   3'- auauuuaGGCgUCUCGGGcGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.