miRNA display CGI


Results 1 - 20 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 135129 0.69 0.738772
Target:  5'- --cGGggUCGCAGggGGCCCGCgcggCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUC--UCGGGCG----GCGUCG- -5'
6491 3' -55 NC_001847.1 + 135086 0.67 0.841005
Target:  5'- ------cCCGCccccGCCCGCCGCAauGCa -3'
miRNA:   3'- auauuuaGGCGucu-CGGGCGGCGU--CG- -5'
6491 3' -55 NC_001847.1 + 134698 0.67 0.841005
Target:  5'- aGUGAGa--GCGGAcGCCCGCgGUAGUg -3'
miRNA:   3'- aUAUUUaggCGUCU-CGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 134179 0.66 0.900922
Target:  5'- -------gCGCauAGAcGCCCGgCGCAGCg -3'
miRNA:   3'- auauuuagGCG--UCU-CGGGCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 134036 0.72 0.582697
Target:  5'- --gGAggCCGCGGcGGCgCCGCCcGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUC-UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 133734 0.71 0.656214
Target:  5'- ------aCCGCGGuGCCCguGCCGCcGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGG--CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 133671 0.69 0.778011
Target:  5'- ------gCCGCuGcGGCuCUGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGuC-UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 133525 0.7 0.697961
Target:  5'- ------gCCGCGGuG-CUGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 133401 0.69 0.778011
Target:  5'- gGUGGAguaccUCUGCGcgcGGCUgGCCGCGGCg -3'
miRNA:   3'- aUAUUU-----AGGCGUc--UCGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 133069 0.73 0.510966
Target:  5'- ------cCCGCGGGGCgcucgccgccaCCGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 133042 0.67 0.841005
Target:  5'- --gAGAU-CGC--GGCCCGCCGCcGCg -3'
miRNA:   3'- auaUUUAgGCGucUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 132833 0.65 0.913534
Target:  5'- ------cCCGCgugcuGGGGCCCauGCCGCccGGCg -3'
miRNA:   3'- auauuuaGGCG-----UCUCGGG--CGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 132681 0.74 0.498026
Target:  5'- --gGGcgCCGCcgcccgcucgaucgGGAGCUCGCUGCGGCu -3'
miRNA:   3'- auaUUuaGGCG--------------UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 132048 0.74 0.481329
Target:  5'- ------gCCGCGGccuGCCgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu--CGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 132010 0.68 0.815042
Target:  5'- --cGGcgCCGCcGGGCUCccggugcucucgGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGuCUCGGG------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 131774 0.73 0.510966
Target:  5'- -----cUCCuGCAGAGCCUGCgGCGcGCg -3'
miRNA:   3'- auauuuAGG-CGUCUCGGGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 131575 0.7 0.728692
Target:  5'- --cGGAcCUGCAGcuggcgcGCCUGCUGCAGCg -3'
miRNA:   3'- auaUUUaGGCGUCu------CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 131460 0.66 0.894246
Target:  5'- cUGUGGugcgCGCAG-GCUCGCgGCGGCc -3'
miRNA:   3'- -AUAUUuag-GCGUCuCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 131445 0.74 0.462042
Target:  5'- ------gCCGCGGGGCCCGCgGCcGUg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGuCG- -5'
6491 3' -55 NC_001847.1 + 131412 0.7 0.687588
Target:  5'- --gAGAUCCGC-GAGgCgGCCGCGcGCu -3'
miRNA:   3'- auaUUUAGGCGuCUCgGgCGGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.